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CDS: C06G4.2a   

C06G4.2aSMapS_parentSequenceC06G4
Structure Source_exons (14)
DB_info Database (3)
Protein_idC06G4 AAV588871
DB_remarkC. elegans CLP-1 protein; contains similarity to Pfam domains PF01067 (Calpain large subunit, domain III), PF00648 (Calpain family cysteine protease)contains similarity to Interpro domains IPR000169 (Peptidase, cysteine peptidase active site), IPR001300 (Peptidase C2, calpain)
Origin (2)
Properties Coding CDS
Prediction_statusConfirmed
IsoformAccession_evidenceEMBL BJ124914
Visible GeneC06G4.2
Corresponding_transcript C06G4.2a.1
C06G4.2a.2
Corresponding_proteinWP:CE37743
Corresponding_PCR_product (8)
Matching_cDNA yk1317a01.5 Inferred_automaticallytranscript_builder.pl
yk1110g05.5 Inferred_automaticallytranscript_builder.pl
yk11f10.5 Inferred_automaticallytranscript_builder.pl
yk1099f01.5 Inferred_automaticallytranscript_builder.pl
WB_RNAi_result (10)
GO_term (5)
Variation (5)
Microarray_results SMD_C06G4.2
SMD_C06G4.3
174918_at
187207_at
188726_at
Aff_C06G4.2
Aff_C06G4.3
Brief_identificationcalpain
Remark added new last intron and exon based on EST data - 01-05-07 js
added the first two exons and exon 12 based on EST data - 02-04-01 js
SL1 trans-spliced; see yk1317a01.5
yk1322d11.3 indicates there is an intron in the 3' UTR but the splices sites are very unusual - 02-04-01 js
removed an internal exon based on EST data(yk1317a01.3)[20041110 po]
this isoform is based on EMBL accession BJ124914
Associated_featureWBsf002547
Methodcurated