CDS: C09G5.5
C09G5.5 | SMap | S_parent | Sequence | C09G5 | |
---|---|---|---|---|---|
Structure | Source_exons | 1 | 138 | ||
186 | 1001 | ||||
DB_info | Database | SwissProt | SwissProt_ID | YQ35_CAEEL | |
SwissProt_AC | Q09456 | ||||
NDB | GI_number | 3874102 | |||
NCBI | RefSeq | NM_063909 | |||
Protein_id | C09G5 | CAA86758 | 1 | ||
DB_remark | C. elegans COL-80 protein; contains similarity to Pfam domains PF01484 (Nematode cuticle collagen N-terminal domain), PF01391 (Collagen triple helix repeat (20 copies))(3)contains similarity to Interpro domains IPR002486 (Nematode cuticle collagen, N-terminal), IPR008160 (Collagen triple helix repeat) | ||||
Origin (2) | |||||
Properties | Coding | CDS | |||
Prediction_status | Confirmed | ||||
Visible | Gene | C09G5.5 | |||
Corresponding_transcript | C09G5.5 | ||||
Corresponding_protein | WP:CE01485 | ||||
Corresponding_PCR_product | cenix:230-c3 | ||||
mv_C09G5.2 | |||||
mv_C09G5.5 | |||||
sjj_C09G5.5 | |||||
Corresponding_RNAi_reagent | Cenix:230-c3 | ||||
sjj_C09G5.5 | |||||
Matching_cDNA (12) | |||||
RNAi_result | Cenix:230-c3 | ||||
JA:C09G5.5 | |||||
WB_RNAi_result (6) | |||||
GO_term | GO:0042302 | IEA | Inferred_automatically | ||
GO:0006817 | IEA | Inferred_automatically | |||
GO:0005737 | IEA | Inferred_automatically | |||
Microarray_results | SMD_C09G5.5 | ||||
188622_at | |||||
Aff_C09G5.5 | |||||
Brief_identification | collagen | ||||
Y2H_target | Y2H008176 | ||||
Remark | 71% identical to C09G5.4 | ||||
34% identical to C09G5.3 | |||||
Method | curated |