Go to RNAiDB Home Adult Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie
 

CDS: C34H4.4a   

C34H4.4aSMapS_parentSequenceC34H4
Structure Source_exons 1141
198616
731941
DB_info Database TREMBL O45140_CAEEL
TrEMBL_AC O45140
NDB GI_number 14573895
NCBI RefSeq NM_067693
Protein_idC34H4 AAC043933
DB_remarkC. elegans COL-107 protein; contains similarity to Pfam domains PF01484 (Nematode cuticle collagen N-terminal domain), PF01391 (Collagen triple helix repeat (20 copies))contains similarity to Interpro domains IPR002486 (Nematode cuticle collagen, N-terminal), IPR008161 (Collagen helix repeat), IPR008160 (Collagen triple helix repeat)
Origin From_laboratoryRW
SpeciesCaenorhabditis elegans
Properties Coding (2)
IsoformAccession_evidenceEMBL AU115829
Visible GeneC34H4.4
Corresponding_transcriptC34H4.4a
Corresponding_proteinWP:CE27821
Corresponding_PCR_product cenix:234-g5
mv_C34H4.4
sjj_C34H4.4
Corresponding_RNAi_reagent Cenix:234-g5
sjj_C34H4.4
Matching_cDNA (14)
RNAi_result Cenix:234-g5
JA:C34H4.4
WB_RNAi_result SA:yk207e2
JA:C34H4.4
MV_SV:mv_C34H4.4
Cenix:234-g5
GO_term GO:0042302 IEA Inferred_automatically
GO:0006817 IEA Inferred_automatically
GO:0005737 IEA Inferred_automatically
Microarray_results SMD_C34H4.4
172803_x_at
Aff_C34H4.4
Brief_identificationcuticular collagen
Remark this gene was extended at the 5' end when the neighboring clone was finished-990107-js
added the last exon based on EST data - 01-05-15 js
this isoform is based on EMBL accession AU115829
Methodcurated