CDS: C34H4.4a
C34H4.4a | SMap | S_parent | Sequence | C34H4 | |
---|---|---|---|---|---|
Structure | Source_exons | 1 | 141 | ||
198 | 616 | ||||
731 | 941 | ||||
DB_info | Database | TREMBL | O45140_CAEEL | ||
TrEMBL_AC | O45140 | ||||
NDB | GI_number | 14573895 | |||
NCBI | RefSeq | NM_067693 | |||
Protein_id | C34H4 | AAC04393 | 3 | ||
DB_remark | C. elegans COL-107 protein; contains similarity to Pfam domains PF01484 (Nematode cuticle collagen N-terminal domain), PF01391 (Collagen triple helix repeat (20 copies))contains similarity to Interpro domains IPR002486 (Nematode cuticle collagen, N-terminal), IPR008161 (Collagen helix repeat), IPR008160 (Collagen triple helix repeat) | ||||
Origin | From_laboratory | RW | |||
Species | Caenorhabditis elegans | ||||
Properties | Coding (2) | ||||
Isoform | Accession_evidence | EMBL | AU115829 | ||
Visible | Gene | C34H4.4 | |||
Corresponding_transcript | C34H4.4a | ||||
Corresponding_protein | WP:CE27821 | ||||
Corresponding_PCR_product | cenix:234-g5 | ||||
mv_C34H4.4 | |||||
sjj_C34H4.4 | |||||
Corresponding_RNAi_reagent | Cenix:234-g5 | ||||
sjj_C34H4.4 | |||||
Matching_cDNA (14) | |||||
RNAi_result | Cenix:234-g5 | ||||
JA:C34H4.4 | |||||
WB_RNAi_result | SA:yk207e2 | ||||
JA:C34H4.4 | |||||
MV_SV:mv_C34H4.4 | |||||
Cenix:234-g5 | |||||
GO_term | GO:0042302 | IEA | Inferred_automatically | ||
GO:0006817 | IEA | Inferred_automatically | |||
GO:0005737 | IEA | Inferred_automatically | |||
Microarray_results | SMD_C34H4.4 | ||||
172803_x_at | |||||
Aff_C34H4.4 | |||||
Brief_identification | cuticular collagen | ||||
Remark | this gene was extended at the 5' end when the neighboring clone was finished-990107-js | ||||
added the last exon based on EST data - 01-05-15 js | |||||
this isoform is based on EMBL accession AU115829 | |||||
Method | curated |