CDS: C34H4.4b
C34H4.4b | SMap | S_parent | Sequence | C34H4 | |
---|---|---|---|---|---|
Structure | Source_exons | 1 | 141 | ||
198 | 941 | ||||
DB_info | Database | TREMBL | Q86S35_CAEEL | ||
TrEMBL_AC | Q86S35 | ||||
NDB | GI_number | 28476827 | |||
NCBI | RefSeq | NM_182305 | |||
Protein_id | C34H4 | AAO44912 | 1 | ||
DB_remark | C. elegans COL-107 protein; contains similarity to Pfam domains PF01484 (Nematode cuticle collagen N-terminal domain), PF01391 (Collagen triple helix repeat (20 copies))(2)contains similarity to Interpro domains IPR002486 (Nematode cuticle collagen, N-terminal), IPR008161 (Collagen helix repeat), IPR008160 (Collagen triple helix repeat) | ||||
Origin | From_laboratory | RW | |||
Species | Caenorhabditis elegans | ||||
Properties | Coding | CDS | |||
Prediction_status | Confirmed | ||||
Isoform | Accession_evidence | EMBL | BJ140867 | ||
Visible | Gene | C34H4.4 | |||
Corresponding_transcript | C34H4.4b | ||||
Corresponding_protein | WP:CE20539 | ||||
Corresponding_PCR_product | cenix:234-g5 | ||||
mv_C34H4.4 | |||||
sjj_C34H4.4 | |||||
Corresponding_RNAi_reagent | Cenix:234-g5 | ||||
sjj_C34H4.4 | |||||
Matching_cDNA | OSTR146C1_1 | Inferred_automatically | transcript_builder.pl | ||
yk1127b02.3 | Inferred_automatically | transcript_builder.pl | |||
yk732b9.3 | Inferred_automatically | transcript_builder.pl | |||
yk1112a09.3 | Inferred_automatically | transcript_builder.pl | |||
yk1091f11.3 | Inferred_automatically | transcript_builder.pl | |||
yk1157e08.3 | Inferred_automatically | transcript_builder.pl | |||
yk1046d09.3 | Inferred_automatically | transcript_builder.pl | |||
yk1071a11.3 | Inferred_automatically | transcript_builder.pl | |||
yk72c11.3 | Inferred_automatically | transcript_builder.pl | |||
yk1163c11.3 | Inferred_automatically | transcript_builder.pl | |||
yk1228f12.3 | Inferred_automatically | transcript_builder.pl | |||
yk1023c05.3 | Inferred_automatically | transcript_builder.pl | |||
CEESN24F | Inferred_automatically | transcript_builder.pl | |||
yk1291d09.3 | Inferred_automatically | transcript_builder.pl | |||
yk751e05.3 | Inferred_automatically | transcript_builder.pl | |||
yk1295d09.3 | Inferred_automatically | transcript_builder.pl | |||
yk853a12.5 | Inferred_automatically | transcript_builder.pl | |||
yk1284h09.3 | Inferred_automatically | transcript_builder.pl | |||
yk1309b07.3 | Inferred_automatically | transcript_builder.pl | |||
yk1023c05.5 | Inferred_automatically | transcript_builder.pl | |||
yk1289a03.3 | Inferred_automatically | transcript_builder.pl | |||
yk853a12.3 | Inferred_automatically | transcript_builder.pl | |||
yk1130b01.3 | Inferred_automatically | transcript_builder.pl | |||
yk1046d09.5 | Inferred_automatically | transcript_builder.pl | |||
yk737c7.3 | Inferred_automatically | transcript_builder.pl | |||
RNAi_result | Cenix:234-g5 | ||||
JA:C34H4.4 | |||||
WB_RNAi_result | SA:yk207e2 | ||||
JA:C34H4.4 | |||||
MV_SV:mv_C34H4.4 | |||||
Cenix:234-g5 | |||||
GO_term | GO:0042302 | IEA | Inferred_automatically | ||
GO:0006817 | IEA | Inferred_automatically | |||
GO:0005737 | IEA | Inferred_automatically | |||
Microarray_results | SMD_C34H4.4 | ||||
172803_x_at | |||||
Aff_C34H4.4 | |||||
Remark | this isoform is based on EMBL accession BJ140867 | ||||
Method | curated |