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CDS: C54F6.8
| C54F6.8 | SMap | S_parent | Sequence | C54F6 | |
|---|---|---|---|---|---|
| Structure | Source_exons (5) | ||||
| DB_info | Database | TREMBL | O16443_CAEEL | ||
| TrEMBL_AC | O16443 | ||||
| NDB | GI_number | 10864305 | |||
| Protein_id | C54F6 | AAG24018 | 1 | ||
| DB_remark | C. elegans NHR-171 protein; contains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor), PF00105 (Zinc finger, C4 type (two domains))contains similarity to Interpro domains IPR000536 (Nuclear hormone receptor, ligand-binding), IPR001628 (Nuclear hormone receptor, DNA-binding) | ||||
| Origin | From_laboratory | RW | |||
| Species | Caenorhabditis elegans | ||||
| Properties | Coding | CDS | |||
| Prediction_status | Partially_confirmed | ||||
| Visible | Gene | C54F6.8 | |||
| Corresponding_transcript | C54F6.8 | ||||
| Corresponding_protein | WP:CE17603 | ||||
| Corresponding_PCR_product | cenix:40-f4 | ||||
| mv_C54F6.8 | |||||
| sjj_C54F6.8 | |||||
| Corresponding_RNAi_reagent | Cenix:40-f4 | ||||
| sjj_C54F6.8 | |||||
| Matching_cDNA | OSTR176H9_1 | Inferred_automatically | transcript_builder.pl | ||
| OSTF176H9_1 | Inferred_automatically | transcript_builder.pl | |||
| RNAi_result | Cenix:40-f4 | ||||
| JA:C54F6.8 | |||||
| WB_RNAi_result | JA:C54F6.8 | ||||
| MV_SV:mv_C54F6.8 | |||||
| Cenix:40-f4 | |||||
| GO_term | GO:0003700 | IEA | Inferred_automatically | ||
| GO:0006355 | IEA | Inferred_automatically | |||
| GO:0005634 | IEA | Inferred_automatically | |||
| GO:0003707 | IEA | Inferred_automatically | |||
| Variation | tm1255 | ||||
| Microarray_results | SMD_C54F6.8 | ||||
| 190876_at | |||||
| Aff_C54F6.8 | |||||
| Brief_identification | nuclear hormone receptor | ||||
| Y2H_bait | Y2H006847 | ||||
| Remark | a new first exon was added based on proteins similarities pointed out by Ann Sluder-980416-js | ||||
| Method | curated |
