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CDS: D2013.8a
| D2013.8a | SMap | S_parent | Sequence | D2013 | |
|---|---|---|---|---|---|
| Structure | Source_exons (12) | ||||
| DB_info | Database | TREMBL | Q18968_CAEEL | ||
| TrEMBL_AC | Q18968 | ||||
| NDB | GI_number | 27151759 | |||
| Protein_id | D2013 | CAA87777 | 2 | ||
| DB_remark | C. elegans SCP-1 protein; contains similarity to Pfam domain PF00400 (WD domain, G-beta repeat)contains similarity to Interpro domains IPR001680 (WD-40 repeat), IPR000731 (Sterol-sensing 5TM box) | ||||
| Origin | From_laboratory | HX | |||
| Species | Caenorhabditis elegans | ||||
| Properties | Coding | CDS | |||
| Prediction_status | Confirmed | ||||
| Isoform | Accession_evidence | NDB | BJ766249 | ||
| Visible | Gene | D2013.8 | |||
| Corresponding_transcript | D2013.8a.1 | ||||
| D2013.8a.2 | |||||
| Corresponding_protein | WP:CE32616 | ||||
| Corresponding_PCR_product | cenix:201-h5 | ||||
| mv_D2013.8 | |||||
| sjj_D2013.8 | |||||
| Matching_cDNA (38) | |||||
| WB_RNAi_result (6) | |||||
| GO_term | GO:0009792 | IMP | Inferred_automatically | ||
| Variation | snp_D2013[2] | ||||
| snp_D2013[3] | |||||
| Microarray_results | SMD_D2013.8 | ||||
| 174961_s_at | |||||
| 187932_at | |||||
| Aff_D2013.8 | |||||
| Remark | the 6th exon (38265..38362) has a poor splice site leading into it. There is a stronger splice site upstream but do not seem able to use this one | ||||
| The amino end of this predicted protein is similar to the transmembranous domains of 3-hydroxy-3-methylglutaryl-coenzyme A reductase; the carboxyl end shows weak similarity to GTP binding proteins | |||||
| [980325 dl] : Modified prediction based on EST data | |||||
| Associated_feature | WBsf014631 | ||||
| Method | curated |
