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CDS: F01G12.5a
| F01G12.5a | SMap | S_parent | Sequence | F01G12 | |
|---|---|---|---|---|---|
| Structure | Source_exons (18) | ||||
| DB_info | Database | SwissProt | SwissProt_ID | CO4A2_CAEEL | |
| SwissProt_AC | P17140 | ||||
| NDB | GI_number | 1255878 | |||
| NCBI | RefSeq | NM_078263 | |||
| Protein_id | F01G12 | AAA96216 | 1 | ||
| DB_remark | C. elegans LET-2 protein; contains similarity to Pfam domains PF01413 (C-terminal tandem repeated domain in type 4 procollagen)(2), PF01391 (Collagen triple helix repeat (20 copies))(22), PF07054 (Pericardin like repeat)(3)contains similarity to Interpro domains IPR009765 (Pericardin like), IPR008161 (Collagen helix repeat), IPR001442 (Type 4 procollagen, C-terminal repeat), IPR008160 (Collagen triple helix repeat) | ||||
| Origin | From_laboratory | RW | |||
| Species | Caenorhabditis elegans | ||||
| Properties | Coding | CDS | |||
| Prediction_status | Partially_confirmed | ||||
| Isoform | Accession_evidence | EMBL | CAA80536.1 | ||
| Visible | Gene | F01G12.5 | |||
| Corresponding_transcript | F01G12.5a | ||||
| Corresponding_protein | WP:CE04334 | ||||
| Corresponding_PCR_product (5) | |||||
| Corresponding_RNAi_reagent | Cenix:71-f6 | ||||
| sjj_F01G12.5a | |||||
| RNAi_result | JA:F01G12.5a | ||||
| Simmer:F01G12.5a:Repeat_a | |||||
| Simmer:F01G12.5a:Screen | |||||
| Cenix:71-f6 | |||||
| WB_RNAi_result (6) | |||||
| GO_term (9) | |||||
| Variation | pkP6093 | ||||
| pkP6096 | |||||
| Microarray_results | SMD_F01G12.5A | ||||
| 192923_s_at | |||||
| Aff_F01G12.5A | |||||
| Brief_identification | alpha-2 type IV collagen | ||||
| Remark | this isoform is based on EMBL accession CAA80536.1 | ||||
| Method | curated |
