CDS: F01G12.5b
F01G12.5b | SMap | S_parent | Sequence | F01G12 | |
---|---|---|---|---|---|
Structure | Source_exons | 1 | 23 | ||
241 | 295 | ||||
493 | 555 | ||||
930 | 1029 | ||||
1352 | 1540 | ||||
2042 | 2217 | ||||
2269 | 2346 | ||||
2605 | 2715 | ||||
3113 | 3229 | ||||
3276 | 3440 | ||||
3490 | 3761 | ||||
3809 | 4670 | ||||
4723 | 5395 | ||||
5673 | 6487 | ||||
6533 | 6764 | ||||
6818 | 7609 | ||||
7692 | 8155 | ||||
8214 | 8306 | ||||
DB_info | Database | SwissProt | SwissProt_ID | CO4A2_CAEEL | |
SwissProt_AC | P17140 | ||||
NDB | GI_number | 1255877 | |||
NCBI | RefSeq | NM_078262 | |||
Protein_id | F01G12 | AAA96215 | 1 | ||
DB_remark | C. elegans LET-2 protein; contains similarity to Pfam domains PF01413 (C-terminal tandem repeated domain in type 4 procollagen)(2), PF01391 (Collagen triple helix repeat (20 copies))(22), PF07054 (Pericardin like repeat)(3)contains similarity to Interpro domains IPR009765 (Pericardin like), IPR008161 (Collagen helix repeat), IPR001442 (Type 4 procollagen, C-terminal repeat), IPR008160 (Collagen triple helix repeat) | ||||
Origin | From_laboratory | RW | |||
Species | Caenorhabditis elegans | ||||
Properties | Coding | CDS | |||
Prediction_status | Partially_confirmed | ||||
Isoform | Accession_evidence | EMBL | CAA80537.1 | ||
Visible | Gene | F01G12.5 | |||
Corresponding_transcript | F01G12.5b.1 | ||||
F01G12.5b.2 | |||||
Corresponding_protein | WP:CE04335 | ||||
Corresponding_PCR_product (5) | |||||
Matching_cDNA (47) | |||||
WB_RNAi_result (6) | |||||
GO_term (9) | |||||
Variation | pkP6093 | ||||
pkP6096 | |||||
Microarray_results | SMD_F01G12.5A | ||||
192923_s_at | |||||
Aff_F01G12.5A | |||||
Brief_identification | alpha-2 type IV collagen | ||||
Remark | this isoform is based on EMBL accession CAA80537.1 | ||||
Method | curated |