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CDS: F11C1.6b
| F11C1.6b | SMap | S_parent | Sequence | F11C1 | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (8) | |||||
| DB_info | Database | TREMBL | Q7JMA3_CAEEL | |||
| TrEMBL_AC | Q7JMA3 | |||||
| NDB | GI_number | 37619810 | ||||
| Protein_id | F11C1 | CAE48496 | 1 | |||
| DB_remark | C. elegans NHR-25 protein; contains similarity to Pfam domain PF00104 (Ligand-binding domain of nuclear hormone receptor)contains similarity to Interpro domains IPR001723 (Steroid hormone receptor), IPR000536 (Nuclear hormone receptor, ligand-binding) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Confirmed | |||||
| Isoform | Accession_evidence | NDB | AF179215 | |||
| Visible | Gene | F11C1.6 | ||||
| Corresponding_transcript | F11C1.6b.1 | |||||
| F11C1.6b.2 | ||||||
| F11C1.6b.3 | ||||||
| Corresponding_protein | WP:CE35856 | |||||
| Corresponding_PCR_product | cenix:53-b7 | |||||
| sjj_F11C1.6 | ||||||
| mv_F11C1.6 | ||||||
| Matching_cDNA | yk342d8.5 | Inferred_automatically | transcript_builder.pl | |||
| yk1329b12.5 | Inferred_automatically | transcript_builder.pl | ||||
| AF179215 | Inferred_automatically | transcript_builder.pl | ||||
| WB_RNAi_result (14) | ||||||
| GO_term (16) | ||||||
| Variation | ok645 | |||||
| Microarray_results | SMD_F11C1.6 | |||||
| 193001_s_at | ||||||
| Aff_F11C1.6 | ||||||
| Remark | [030923 pad] Gene prediction entered to represent the data from cDNA AF179215. Utilises the SL1 site near the 5' end of exon 2 but the 1st available ATG is at the 3' end of exon 3. | |||||
| [alt] Alternate isoform defined by cDNA AF179215 | ||||||
| [tsl] SL1 trans-spliced | Accession_evidence | NDB | AF179215 | |||
| Associated_feature | WBsf007424 | |||||
| WBsf012563 | ||||||
| Method | curated |
