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CDS: F11H8.2
| F11H8.2 | SMap | S_parent | Sequence | F11H8 | |
|---|---|---|---|---|---|
| Structure | Source_exons | 1 | 57 | ||
| 342 | 403 | ||||
| 5066 | 5160 | ||||
| 5833 | 5900 | ||||
| 5952 | 6215 | ||||
| 6622 | 6660 | ||||
| 6854 | 7057 | ||||
| 7232 | 7319 | ||||
| 7367 | 7480 | ||||
| 7535 | 7630 | ||||
| 8114 | 8181 | ||||
| 9845 | 9985 | ||||
| 10077 | 10160 | ||||
| DB_info | Database | TREMBL | Q19358_CAEEL | ||
| TrEMBL_AC | Q19358 | ||||
| NDB | GI_number | 46195905 | |||
| Protein_id | F11H8 | AAA81158 | 3 | ||
| DB_remark | contains similarity to Pfam domains PF02931 (Neurotransmitter-gated ion-channel ligand binding domain), PF02932 (Neurotransmitter-gated ion-channel transmembrane region)contains similarity to Interpro domains IPR001390 (Gamma-aminobutyric-acid A receptor, alpha subunit), IPR006028 (Gamma-aminobutyric acid A receptor), IPR006201 (Neurotransmitter-gated ion-channel), IPR006202 (Neurotransmitter-gated ion-channel ligand-binding), IPR006029 (Neurotransmitter-gated ion-channel transmembrane region) | ||||
| Origin | From_laboratory | RW | |||
| Species | Caenorhabditis elegans | ||||
| Properties | Coding | CDS | |||
| Prediction_status | Partially_confirmed | ||||
| Visible | Gene | F11H8.2 | |||
| Corresponding_transcript | F11H8.2 | ||||
| Corresponding_protein | WP:CE36534 | ||||
| Corresponding_PCR_product (9) | |||||
| Corresponding_RNAi_reagent (6) | |||||
| Matching_cDNA | yk1297c02.3 | Inferred_automatically | transcript_builder.pl | ||
| yk1335f08.3 | Inferred_automatically | transcript_builder.pl | |||
| yk1165g06.3 | Inferred_automatically | transcript_builder.pl | |||
| RNAi_result | Cenix:306-f7 | ||||
| JA:F11H8.2 | |||||
| TH:306F7 | |||||
| WB_RNAi_result (8) | |||||
| GO_term (9) | |||||
| Variation | uCE3-980 | ||||
| Microarray_results | SMD_C06E8.1 | ||||
| SMD_F11H8.2 | |||||
| Brief_identification | gamma-aminobutyric acid receptor | ||||
| Remark | changed the 5' splice site in the last intron, removed the former 10th exon, changed the 3' splice site in the 7th intron and added the first two exons based on EST data - 02-04-03 js | ||||
| merged in C06E8.1 based on EST data - 02-04-26 js | |||||
| [20040402 db] modified several exons when the sequence was corrected | |||||
| Method | curated |
