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CDS: F17E5.1b
| F17E5.1b | SMap | S_parent | Sequence | F17E5 | |
|---|---|---|---|---|---|
| Structure | Source_exons (14) | ||||
| DB_info | Database | SwissProt | SwissProt_ID | LIN2_CAEEL | |
| SwissProt_AC | P54936 | ||||
| NDB | GI_number | 13548308 | |||
| Protein_id | F17E5 | CAA90759 | 2 | ||
| DB_remark | C. elegans LIN-2 protein; contains similarity to Pfam domains PF07653 (Variant SH3 domain), PF02828 (L27 domain), PF00595 (PDZ domain (Also known as DHR or GLGF)), PF00018 (SH3 domain), PF00625 (Guanylate kinase)contains similarity to Interpro domains IPR008144 (Guanylate kinase), IPR002290 (Serine/threonine protein kinase), IPR008145 (Guanylate kinase/L-type calcium channel region), IPR001452 (SH3), IPR000719 (Protein kinase), IPR011511 (Variant SH3), IPR001478 (PDZ/DHR/GLGF), IPR008266 (Tyrosine protein kinase, active site), IPR004172 (L27) | ||||
| Origin | From_laboratory | HX | |||
| Species | Caenorhabditis elegans | ||||
| Properties | Coding | CDS | |||
| Prediction_status | Partially_confirmed | ||||
| Isoform | Accession_evidence | NDB | CELIN2B | ||
| Inferred_automatically | transcript_builder | ||||
| Visible | Gene | F17E5.1 | |||
| Corresponding_transcript | F17E5.1b | ||||
| Corresponding_protein | WP:CE27132 | ||||
| Corresponding_PCR_product | cenix:147-c4 | ||||
| mv_CAA63314 | |||||
| sjj_F17E5.1 | |||||
| mv_CAA63315 | |||||
| Corresponding_RNAi_reagent | Cenix:147-c4 | ||||
| sjj_F17E5.1 | |||||
| Matching_cDNA | X92565 | Inferred_automatically | transcript_builder.pl | ||
| yk181c3.3 | Inferred_automatically | transcript_builder.pl | |||
| OSTF155A6_1 | Inferred_automatically | transcript_builder.pl | |||
| RNAi_result | Cenix:147-c4 | ||||
| JA:F17E5.1 | |||||
| WB_RNAi_result | SA:yk213c8 | ||||
| JA:F17E5.1 | |||||
| MV_SV:mv_CAA63314 | |||||
| Cenix:147-c4 | |||||
| GO_term (6) | |||||
| Variation | snp_F17E5[1] | ||||
| snp_F17E5[2] | |||||
| uCE6-1260 | |||||
| Microarray_results | SMD_F17E5.1 | ||||
| 174032_s_at | |||||
| 194033_s_at | |||||
| Aff_F17E5.1A | |||||
| Brief_identification | erythrocyte membrane like protein | ||||
| Remark | 951117: Splice sites for exon 6 - 7 utilise the rare GC..AG intron type | ||||
| [010331 dl] Modified prediction based on mRNA X92565 | |||||
| Method | curated |
