CDS: F18A1.3b
F18A1.3b | SMap | S_parent | Sequence | F18A1 | |
---|---|---|---|---|---|
Structure | Source_exons (5) | ||||
DB_info | Database | TREMBL | Q9Y051_CAEEL | ||
TrEMBL_AC | Q9Y051 | ||||
NDB | GI_number | 14550439 | |||
Protein_id | F18A1 | AAK67249 | 1 | ||
DB_remark | C. elegans LIR-1 protein; contains similarity to Interpro domain IPR007087 (Zinc finger, C2H2-type) | ||||
Origin | From_laboratory | RW | |||
Species | Caenorhabditis elegans | ||||
Properties | Coding | CDS | |||
Prediction_status | Confirmed | ||||
Isoform | Accession_evidence | EMBL | CEL012485 | ||
Visible | Gene | F18A1.3 | |||
Corresponding_transcript | F18A1.3b | ||||
Corresponding_protein | WP:CE27974 | ||||
Corresponding_PCR_product (6) | |||||
Corresponding_RNAi_reagent | Cenix:28-c5 | ||||
Cenix:204-d5 | |||||
sjj_F18A1.3 | |||||
Matching_cDNA | yk779g04.3 | Inferred_automatically | transcript_builder.pl | ||
yk1672g11.5 | Inferred_automatically | transcript_builder.pl | |||
AJ012485 | Inferred_automatically | transcript_builder.pl | |||
yk1375a12.5 | Inferred_automatically | transcript_builder.pl | |||
RNAi_result (4) | |||||
WB_RNAi_result (6) | |||||
GO_term (8) | |||||
Variation | uCE2-1758 | ||||
uCE2-1759 | |||||
uCE2-1760 | |||||
Microarray_results | SMD_F18A1.3 | ||||
176605_s_at | |||||
Aff_F18A1.3 | |||||
Remark | SL2 trans-spliced; see AJ012485 | ||||
3' exon overlaps 5' exon in F18A1.2b and is confirmed ok by mRNA data. tb 021010 | |||||
EST yk1107d07.5 suggests there is an alternative form but it contains unusual splice sites and numerous stops so it would be difficult to fit it into any coding structure [20021101 po] | |||||
this isoform is based on EMBL accession CEL012485 | |||||
Associated_feature | WBsf000167 | ||||
WBsf000169 | |||||
Method | curated |