CDS: F18C12.2a
F18C12.2a | SMap | S_parent | Sequence | F18C12 | |
---|---|---|---|---|---|
Structure | Source_exons | 1 | 71 | ||
117 | 192 | ||||
242 | 442 | ||||
660 | 857 | ||||
907 | 1209 | ||||
1466 | 1724 | ||||
1778 | 2244 | ||||
2547 | 2957 | ||||
3309 | 3889 | ||||
3959 | 4636 | ||||
4951 | 5590 | ||||
5740 | 5855 | ||||
5963 | 6180 | ||||
6646 | 6833 | ||||
6877 | 7068 | ||||
7502 | 7954 | ||||
8246 | 8353 | ||||
8442 | 8652 | ||||
8763 | 8786 | ||||
9708 | 10161 | ||||
10229 | 10519 | ||||
10599 | 11182 | ||||
11373 | 11488 | ||||
DB_info | Database (2) | ||||
Protein_id | F18C12 | CAA99831 | 3 | ||
DB_remark | C. elegans RME-8 protein; contains similarity to Pfam domain PF00226 (DnaJ domain)contains similarity to Interpro domains IPR011989 (Armadillo-like helical), IPR001623 (Heat shock protein DnaJ, N-terminal) | ||||
Origin | From_laboratory | HX | |||
Species | Caenorhabditis elegans | ||||
Properties | Coding | CDS | |||
Prediction_status | Confirmed | ||||
Isoform | Accession_evidence | NDB | C60694 | ||
Inferred_automatically | transcript_builder | ||||
Visible | Gene | F18C12.2 | |||
Corresponding_transcript | F18C12.2a | ||||
Corresponding_protein | WP:CE30344 | ||||
Corresponding_PCR_product | cenix:84-b10 | ||||
sjj_F18C12.2 | |||||
mv_F18C12.2a | |||||
mv_F18C12.2b | |||||
Corresponding_RNAi_reagent | Cenix:84-b10 | ||||
sjj_F18C12.2 | |||||
Matching_cDNA (17) | |||||
RNAi_result (8) | |||||
WB_RNAi_result (5) | |||||
GO_term (13) | |||||
Variation | b1023 | ||||
Microarray_results | SMD_F18C12.2 | ||||
189789_s_at | |||||
Aff_F18C12.2A | |||||
Brief_identification | DNA-J like domain | ||||
Remark | 960919: Small exon (32302..32325) added | ||||
[010724 kj] Changed 5' end according t gaze prediction to use better splice sites and prevent CeRep overlap. | |||||
[020225 kj] Removed intron 9 and 22 according to mRNA AF372457 and publication by Zhang, Grant and Hirsh (Mol Biol Cell 12, 2001). | |||||
Method | curated |