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CDS: F18C12.2b
| F18C12.2b | SMap | S_parent | Sequence | F18C12 | |
|---|---|---|---|---|---|
| Structure | Source_exons (22) | ||||
| DB_info | Database | TREMBL | O62178_CAEEL | ||
| TrEMBL_AC | O62178 | ||||
| NDB | GI_number | 19571658 | |||
| Protein_id | F18C12 | CAA99832 | 3 | ||
| DB_remark | C. elegans RME-8 protein; contains similarity to Pfam domain PF00226 (DnaJ domain)contains similarity to Interpro domains IPR011989 (Armadillo-like helical), IPR001623 (Heat shock protein DnaJ, N-terminal) | ||||
| Origin | From_laboratory | HX | |||
| Species | Caenorhabditis elegans | ||||
| Properties | Coding | CDS | |||
| Prediction_status | Confirmed | ||||
| Isoform | Accession_evidence | NDB | C62624 | ||
| Inferred_automatically | transcript_builder | ||||
| Visible | Gene | F18C12.2 | |||
| Corresponding_transcript | F18C12.2b | ||||
| Corresponding_protein | WP:CE30345 | ||||
| Corresponding_PCR_product | cenix:84-b10 | ||||
| sjj_F18C12.2 | |||||
| mv_F18C12.2a | |||||
| mv_F18C12.2b | |||||
| Corresponding_RNAi_reagent | Cenix:84-b10 | ||||
| sjj_F18C12.2 | |||||
| Matching_cDNA | yk250d6.5 | Inferred_automatically | transcript_builder.pl | ||
| RNAi_result | Cenix:84-b10 | ||||
| JA:F18C12.2 | |||||
| Simmer:F18C12.2:Screen_A | |||||
| Simmer:F18C12.2:Screen_B | |||||
| WB_RNAi_result (5) | |||||
| GO_term (13) | |||||
| Variation | b1023 | ||||
| Microarray_results | SMD_F18C12.2 | ||||
| 189789_s_at | |||||
| Aff_F18C12.2A | |||||
| Brief_identification | DnaJ domain | ||||
| Remark | Annotated using Pfam | ||||
| [010724 kj] Changed 5' end according t gaze prediction to use better splice sites and prevent CeRep overlap. | |||||
| [020225 kj] Removed intron 9 and 21 according to mRNA AF372457 and publication by Zhang, Grant and Hirsh (Mol Biol Cell 12, 2001). | |||||
| Method | curated |
