CDS: F33A8.9
F33A8.9 | SMap | S_parent | Sequence | F33A8 | ||
---|---|---|---|---|---|---|
Structure | Source_exons | 1 | 159 | |||
207 | 275 | |||||
928 | 1152 | |||||
1199 | 1393 | |||||
1442 | 1834 | |||||
DB_info | Database | TREMBL | Q9NAQ4_CAEEL | |||
TrEMBL_AC | Q9NAQ4 | |||||
NDB | GI_number | 33589138 | ||||
NCBI | RefSeq | NM_063966 | ||||
Protein_id | F33A8 | CAB82206 | 2 | |||
DB_remark | C. elegans COL-83 protein; contains similarity to Pfam domains PF01484 (Nematode cuticle collagen N-terminal domain), PF01391 (Collagen triple helix repeat (20 copies))(3)contains similarity to Interpro domains IPR002486 (Nematode cuticle collagen, N-terminal), IPR008161 (Collagen helix repeat), IPR008160 (Collagen triple helix repeat) | |||||
Origin | From_laboratory | HX | ||||
Species | Caenorhabditis elegans | |||||
Properties | Coding | CDS | ||||
Prediction_status | Partially_confirmed | |||||
Visible | Gene | F33A8.9 | ||||
Corresponding_transcript | F33A8.9 | |||||
Corresponding_protein | WP:CE35183 | |||||
Corresponding_PCR_product | cenix:60-c7 | |||||
mv_F33A8.9 | ||||||
Corresponding_RNAi_reagent | Cenix:60-c7 | |||||
Matching_cDNA | OSTR102D10_1 | Inferred_automatically | transcript_builder.pl | |||
OSTF102D10_1 | Inferred_automatically | transcript_builder.pl | ||||
RNAi_result | Cenix:60-c7 | |||||
WB_RNAi_result | MV_SV:mv_F33A8.9 | |||||
Cenix:60-c7 | ||||||
GO_term | GO:0042302 | IEA | Inferred_automatically | |||
GO:0006817 | IEA | Inferred_automatically | ||||
GO:0005737 | IEA | Inferred_automatically | ||||
Microarray_results | 188320_at | |||||
Brief_identification | collagen | |||||
Remark | [000127 dl] Prediction based on halfwise analysis | |||||
[030806 pad] Gene prediction altered to follow OST data. Includes a new 3rd exon. | Accession_evidence | NDB | CB388618 | |||
Method | curated |