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CDS: F36A4.7   

F36A4.7SMapS_parentSequenceF36A4
Structure Source_exons (12)
DB_info Database SwissProt SwissProt_ID RPB1_CAEEL
SwissProt_AC P16356
NDB GI_number 14574184
Protein_idF36A4 AAA961582
DB_remarkC. elegans AMA-1 protein; contains similarity to Pfam domains PF04998 (RNA polymerase Rpb1, domain 5), PF05001 (RNA polymerase Rpb1 C-terminal repeat)(15), PF00623 (RNA polymerase Rpb1, domain 2), PF04997 (RNA polymerase Rpb1, domain 1), PF05000 (RNA polymerase Rpb1, domain 4), PF04983 (RNA polymerase Rpb1, domain 3), PF04992 (RNA polymerase Rpb1, domain 6), PF04990 (RNA polymerase Rpb1, domain 7)contains similarity to Interpro domains IPR006592 (RNA polymerase I subunit A, N-terminal), IPR007066 (RNA polymerase Rpb1, domain 3), IPR007080 (RNA polymerase Rpb1, domain 1), IPR007083 (RNA polymerase Rpb1, domain 4), IPR000722 (RNA polymerase, alpha subunit), IPR000684 (Eukaryotic RNA polymerase II heptapeptide repeat), IPR007073 (RNA polymerase Rpb1, domain 7), IPR007081 (RNA polymerase Rpb1, domain 5), IPR007075 (RNA polymerase Rpb1, domain 6)
Origin From_laboratoryRW
SpeciesCaenorhabditis elegans
Properties Coding CDS
Prediction_statusPartially_confirmed
Visible GeneF36A4.7
Corresponding_transcriptF36A4.7
Corresponding_proteinWP:CE28300
Corresponding_PCR_product cenix:40-b12
sjj_F36A4.7
mv_AAA28126
Corresponding_RNAi_reagent Cenix:40-b12
sjj_F36A4.7
Matching_cDNA (36)
RNAi_result Cenix:40-b12
JA:F36A4.7
Simmer:F36A4.7
WB_RNAi_result (5)
GO_term (10)
Microarray_resultsSMD_F36A4.7
Brief_identificationRNA polymerase II
Remarkchanged the 5' splice site in intron 7 based on EST data - 01-06-13 js
Methodcurated