CDS: F38B6.5a
F38B6.5a | SMap | S_parent | Sequence | F38B6 | |
---|---|---|---|---|---|
Structure | Source_exons | 1 | 66 | ||
123 | 233 | ||||
279 | 414 | ||||
461 | 580 | ||||
626 | 975 | ||||
1075 | 1317 | ||||
DB_info | Database | TREMBL | Q20142_CAEEL | ||
TrEMBL_AC | Q20142 | ||||
NDB | GI_number | 1055175 | |||
Protein_id | F38B6 | AAA81141 | 1 | ||
DB_remark | C. elegans COL-172 protein; contains similarity to Pfam domains PF01484 (Nematode cuticle collagen N-terminal domain), PF01391 (Collagen triple helix repeat (20 copies))(3)contains similarity to Interpro domains IPR002486 (Nematode cuticle collagen, N-terminal), IPR008160 (Collagen triple helix repeat) | ||||
Origin | From_laboratory | RW | |||
Species | Caenorhabditis elegans | ||||
Properties | Coding | CDS | |||
Prediction_status | Confirmed | ||||
Isoform | Accession_evidence | EMBL | C71059 | ||
Visible | Gene | F38B6.5 | |||
Corresponding_transcript | F38B6.5a | ||||
Corresponding_protein | WP:CE04518 | ||||
Corresponding_PCR_product | cenix:60-g8 | ||||
mv_F38B6.5 | |||||
sjj_F38B6.5 | |||||
Corresponding_RNAi_reagent | Cenix:60-g8 | ||||
sjj_F38B6.5 | |||||
Matching_cDNA (9) | |||||
RNAi_result | Cenix:60-g8 | ||||
JA:F38B6.5 | |||||
WB_RNAi_result | JA:F38B6.5 | ||||
MV_SV:mv_F38B6.5 | |||||
Cenix:60-g8 | |||||
GO_term | GO:0042302 | IEA | Inferred_automatically | ||
GO:0006817 | IEA | Inferred_automatically | |||
GO:0005737 | IEA | Inferred_automatically | |||
Microarray_results | SMD_F38B6.5 | ||||
189803_at | |||||
Aff_F38B6.5 | |||||
Brief_identification | cuticular collagen | ||||
Remark | this isoform is based on EMBL accession C71059 | ||||
Method | curated |