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CDS: F49C5.4
| F49C5.4 | SMap | S_parent | Sequence | F49C5 | ||
|---|---|---|---|---|---|---|
| Structure | Source_exons (7) | |||||
| DB_info | Database | TREMBL | O17879_CAEEL | |||
| TrEMBL_AC | O17879 | |||||
| NDB | GI_number | 58081808 | ||||
| Protein_id | F49C5 | CAB04433 | 3 | |||
| DB_remark | contains similarity to Pfam domains PF07714 (Protein tyrosine kinase), PF00069 (Protein kinase domain)contains similarity to Interpro domains IPR002290 (Serine/threonine protein kinase), IPR008271 (Serine/threonine protein kinase, active site), IPR000719 (Protein kinase), IPR001245 (Tyrosine protein kinase) | |||||
| Origin | From_laboratory | HX | ||||
| Species | Caenorhabditis elegans | |||||
| Properties | Coding | CDS | ||||
| Prediction_status | Partially_confirmed | |||||
| Visible | Gene | F49C5.4 | ||||
| Corresponding_transcript | F49C5.4 | |||||
| Corresponding_protein | WP:CE37918 | |||||
| Corresponding_PCR_product | cenix:205-b12 | |||||
| mv_F49C5.4 | ||||||
| sjj_F49C5.4 | ||||||
| Corresponding_RNAi_reagent | Cenix:205-b12 | |||||
| sjj_F49C5.4 | ||||||
| Matching_cDNA | OSTF105D1_1 | Inferred_automatically | transcript_builder.pl | |||
| RNAi_result | Cenix:205-b12 | |||||
| JA:F49C5.4 | ||||||
| WB_RNAi_result | JA:F49C5.4 | |||||
| MV_SV:mv_F49C5.4 | ||||||
| Cenix:205-b12 | ||||||
| GO_term (5) | ||||||
| Variation | pkP656 | |||||
| snp_F49C5[4] | ||||||
| Microarray_results | SMD_F49C5.4 | |||||
| 193724_at | ||||||
| Aff_F49C5.4 | ||||||
| Brief_identification | serine/threonine kinase (KIN1/SNF1/Nim1 subfamily) | |||||
| Remark | Annotated using Pfam | |||||
| [030903 pad] Gene prediction changed to follow OST OSTF105D1_1, split 1st exon. | Accession_evidence | NDB | CB388800 | |||
| [041213 pad] Gene prediction extended 3' based on briggsae and fly protein homology. Briggsae homology also hinted at a 5' extension but this looks problematic due to the tresence of a tRNA on the same strand. Conserved genomic regions are probably due to the tRNA and also control elements. | ||||||
| Method | curated |
