CDS: F52B11.4
F52B11.4 | SMap | S_parent | Sequence | F52B11 | |
---|---|---|---|---|---|
Structure | Source_exons | 1 | 81 | ||
152 | 985 | ||||
DB_info | Database | TREMBL | Q9XUE9_CAEEL | ||
TrEMBL_AC | Q9XUE9 | ||||
NDB | GI_number | 3877422 | |||
NCBI | RefSeq | NM_070299 | |||
Protein_id | F52B11 | CAB05195 | 1 | ||
DB_remark | C. elegans COL-133 protein; contains similarity to Pfam domains PF01484 (Nematode cuticle collagen N-terminal domain), PF01391 (Collagen triple helix repeat (20 copies))(2)contains similarity to Interpro domains IPR002486 (Nematode cuticle collagen, N-terminal), IPR008160 (Collagen triple helix repeat) | ||||
Origin | From_laboratory | HX | |||
Species | Caenorhabditis elegans | ||||
Properties | Coding | CDS | |||
Prediction_status | Partially_confirmed | ||||
Visible | Gene | F52B11.4 | |||
Corresponding_transcript | F52B11.4 | ||||
Corresponding_protein | WP:CE18724 | ||||
Corresponding_PCR_product | cenix:185-b2 | ||||
mv_F52B11.4 | |||||
sjj_F52B11.4 | |||||
Corresponding_RNAi_reagent | Cenix:185-b2 | ||||
sjj_F52B11.4 | |||||
Matching_cDNA | OSTF056F9_1 | Inferred_automatically | transcript_builder.pl | ||
OSTF146D6_1 | Inferred_automatically | transcript_builder.pl | |||
OSTR146D6_1 | Inferred_automatically | transcript_builder.pl | |||
RNAi_result (5) | |||||
WB_RNAi_result (22) | |||||
GO_term | GO:0040032 | IMP | Inferred_automatically | ||
GO:0040018 | IMP | Inferred_automatically | |||
GO:0009792 | IMP | Inferred_automatically | |||
GO:0040010 | IMP | Inferred_automatically | |||
GO:0002119 | IMP | Inferred_automatically | |||
GO:0040007 | IMP | Inferred_automatically | |||
GO:0007582 | IMP | Inferred_automatically | |||
GO:0002009 | IMP | Inferred_automatically | |||
GO:0007626 | IMP | Inferred_automatically | |||
GO:0042302 | IEA | Inferred_automatically | |||
GO:0006817 | IEA | Inferred_automatically | |||
GO:0005737 | IEA | Inferred_automatically | |||
Variation | snp_F52B11[2] | ||||
Microarray_results | SMD_F52B11.4 | ||||
172821_x_at | |||||
Aff_F52B11.4 | |||||
Brief_identification | CUTICLE COLLAGEN 34 | ||||
Remark | Annotation based on homology to SwissProt P34687 (BLASTP score 808) | ||||
Method | curated |