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CDS: F54D8.1
| F54D8.1 | SMap | S_parent | Sequence | F54D8 | |
|---|---|---|---|---|---|
| Structure | Source_exons | 1 | 415 | ||
| 468 | 1111 | ||||
| DB_info | Database | TREMBL | Q20778_CAEEL | ||
| TrEMBL_AC | Q20778 | ||||
| NDB | GI_number | 15145360 | |||
| NCBI | RefSeq | NM_065685 | |||
| Protein_id | F54D8 | AAK84534 | 1 | ||
| DB_remark | C. elegans DPY-17 protein; contains similarity to Pfam domains PF01484 (Nematode cuticle collagen N-terminal domain), PF01391 (Collagen triple helix repeat (20 copies))(2)contains similarity to Interpro domains IPR002486 (Nematode cuticle collagen, N-terminal), IPR008161 (Collagen helix repeat), IPR008160 (Collagen triple helix repeat) | ||||
| Origin | From_laboratory | RW | |||
| Species | Caenorhabditis elegans | ||||
| Properties | Coding | CDS | |||
| Prediction_status | Confirmed | ||||
| Visible | Gene | F54D8.1 | |||
| Corresponding_transcript | F54D8.1.1 | ||||
| F54D8.1.2 | |||||
| Corresponding_protein | WP:CE11066 | ||||
| Corresponding_PCR_product (6) | |||||
| Matching_cDNA (124) | |||||
| WB_RNAi_result (7) | |||||
| GO_term (6) | |||||
| Variation | e164 | ||||
| e586 | |||||
| e1345 | |||||
| Microarray_results | SMD_F54D8.1 | ||||
| 181096_at | |||||
| Aff_F54D8.1 | |||||
| Y2H_bait | Y2H010874 | ||||
| Y2H_target | Y2H007027 | ||||
| Remark | SL1 trans-spliced, see EST yk89c1.5 | ||||
| probably dpy-17, see WBG 14(4) page 31 | |||||
| Associated_feature | WBsf003045 | ||||
| Method | curated |
