RNAiDB Tree View

CDS: F54E12.5

F54E12.5	SMap	S_parent	Sequence	F54E12
	Structure	Source_exons	1	384
	DB_info	Database	SwissProt	SwissProt_ID	H2A_CAEEL
				SwissProt_AC	P09588
			NDB	GI_number	3877577
			NCBI	RefSeq	NM_069740
		Protein_id	F54E12	CAB05212	1
		DB_remark	C. elegans HIS-57 protein; contains similarity to Pfam domains PF00808 (Histone-like transcription factor (CBF/NF-Y) and archaeal histone), PF00125 (Core histone H2A/H2B/H3/H4)contains similarity to Interpro domains IPR007124 (Histone-fold/TFIID-TAF/NF-Y), IPR007125 (Histone core), IPR002119 (Histone H2A)
	Origin	From_laboratory	HX
		Species	Caenorhabditis elegans
	Properties	Coding	CDS
			Prediction_status	Predicted
	Visible	Gene	F54E12.5
		Corresponding_transcript	F54E12.5
		Corresponding_protein	WP:CE04501
		Corresponding_PCR_product	cenix:242-e4
			sjj_F54E12.5
			smd_F54E12.5
		Corresponding_RNAi_reagent	Cenix:242-e4
			sjj_F54E12.5
		RNAi_result	Cenix:242-e4
			Simmer:F54E12.5
		WB_RNAi_result	JA:T23D8.6
			Simmer:B0035.7
			Simmer:F08G2.2
			Simmer:F17E9.13
			Simmer:F35H10.1
			Simmer:F45F2.4
			Simmer:F54E12.5
			Simmer:F55G1.10
			Simmer:H02I12.7
			Simmer:T10C6.12
			Simmer:T23D8.6:Screen_A
			Simmer:T23D8.6:Screen_B
			Simmer:ZK131.6
			MV_SV:mv_C50F4.13
			MV_SV:mv_F17E9.13
			MV_SV:mv_F45F2.4
			MV_SV:mv_F55G1.10
			MV_SV:mv_H02I12.7
			MV_SV:mv_T10C6.12
			MV_SV:mv_T23D8.6
			Cenix:242-e4
			Cenix:242-h4
			Cenix:242-e7
			Cenix:236-e12
		GO_term (14)
		Microarray_results	SMD_F54E12.5
			172823_x_at
		Brief_identification	histone H2A
		Remark	[970723 dl] Prosite and Pfam signature for histone H2A (PS00046 & PS00125)
	Method	curated