CDS: F57B1.4
F57B1.4 | SMap | S_parent | Sequence | F57B1 | |
---|---|---|---|---|---|
Structure | Source_exons | 1 | 216 | ||
265 | 1002 | ||||
DB_info | Database | TREMBL | Q20921_CAEEL | ||
TrEMBL_AC | Q20921 | ||||
NDB | GI_number | 24817333 | |||
NCBI | RefSeq | NM_073883 | |||
Protein_id | F57B1 | CAB01508 | 2 | ||
DB_remark | C. elegans COL-160 protein; contains similarity to Pfam domains PF01484 (Nematode cuticle collagen N-terminal domain), PF01391 (Collagen triple helix repeat (20 copies))(3)contains similarity to Interpro domains IPR002486 (Nematode cuticle collagen, N-terminal), IPR008160 (Collagen triple helix repeat) | ||||
Origin | From_laboratory | HX | |||
Species | Caenorhabditis elegans | ||||
Properties | Coding | CDS | |||
Prediction_status | Confirmed | ||||
Visible | Gene | F57B1.4 | |||
Corresponding_transcript | F57B1.4.1 | ||||
F57B1.4.2 | |||||
F57B1.4.3 | |||||
Corresponding_protein | WP:CE31962 | ||||
Corresponding_PCR_product | sjj_F57B1.4 | ||||
mv_G_YK1955_1 | |||||
Matching_cDNA (72) | |||||
WB_RNAi_result | SA:yk279e6 | ||||
JA:F57B1.3 | |||||
JA:F57B1.4 | |||||
Cenix:241-d5 | |||||
GO_term (3) | |||||
Microarray_results | SMD_F57B1.4 | ||||
171725_x_at | |||||
172703_x_at | |||||
Brief_identification | collagen | ||||
Remark | [020917 dl] Modified prediction based on EST data. Removed exon 1 from coding prediction in line with numerous EST data for spliced 5' UTR | ||||
Associated_feature | WBsf002803 | ||||
Method | curated |