CDS: K01B6.1
K01B6.1 | SMap | S_parent | Sequence | K01B6 | |
---|---|---|---|---|---|
Structure | Source_exons (7) | ||||
DB_info | Database | SwissProt | SwissProt_ID | YMM1_CAEEL | |
SwissProt_AC | P34489 | ||||
NDB | GI_number | 3878079 | |||
NCBI | RefSeq | NM_066646 | |||
Protein_id | K01B6 | CAA80128 | 1 | ||
DB_remark | C. elegans FOZI-1 protein; contains similarity to Pfam domain PF02181 (Formin Homology 2 Domain)contains similarity to Interpro domains IPR003104 (Actin-binding FH2), IPR007087 (Zinc finger, C2H2-type) | ||||
Origin | From_laboratory | HX | |||
Species | Caenorhabditis elegans | ||||
Properties | Coding | CDS | |||
Prediction_status | Partially_confirmed | ||||
Visible | Gene | K01B6.1 | |||
Corresponding_transcript | K01B6.1 | ||||
Corresponding_protein | WP:CE00238 | ||||
Corresponding_PCR_product | cenix:320-h10 | ||||
mv_K01B6.1 | |||||
sjj_K01B6.1 | |||||
TH:320H10 | |||||
Corresponding_RNAi_reagent | Cenix:320-h10 | ||||
sjj_K01B6.1 | |||||
TH:320H10 | |||||
Matching_cDNA (6) | |||||
Expr_pattern | Expr64 | ||||
RNAi_result | Cenix:320-h10 | ||||
JA:K01B6.1 | |||||
TH:320H10 | |||||
WB_RNAi_result | TH:320H10 | ||||
JA:K01B6.1 | |||||
MV_SV:mv_K01B6.1 | |||||
Cenix:320-h10 | |||||
GO_term (5) | |||||
Variation | tm563 | ||||
Microarray_results | SMD_K01B6.1 | ||||
191980_at | |||||
Aff_K01B6.1 | |||||
Brief_identification | Zinc-finger motif C2H2 type | ||||
Y2H_target | Y2H002983 | ||||
Remark | contains poly-Glutamine stretch | ||||
Matches C2H2 Zn fingers with blastp. Has C-x2-C-x11-H-x4-H motif; PS00028 requires 12x in the middle. | |||||
Although it's one base off the Prosite motif, many Zn-finger proteins have this motif, e.g. SDC1_CAEEL P24349. | |||||
Method | curated |