![Adult](JavaScript:void
window.open("/cgi-bin/rnaidb/popUpImage.cgi?imgName=N2wormfinal.png",
"RNAiDB Help","toolbar=no, location=no, directories=no,
status=no, menubar=no, scrollbars=yes, resizable=no,
copyhistory=no, width=1000, height=550"))
CDS: K04H4.1b
| K04H4.1b | SMap | S_parent | Sequence | K04H4 | |
|---|---|---|---|---|---|
| Structure | Source_exons (10) | ||||
| DB_info | Database | SwissProt | SwissProt_ID | CO4A1_CAEEL | |
| SwissProt_AC | P17139 | ||||
| NDB | GI_number | 42733226 | |||
| Protein_id | K04H4 | CAE52901 | 2 | ||
| DB_remark | C. elegans EMB-9 protein; contains similarity to Pfam domains PF01413 (C-terminal tandem repeated domain in type 4 procollagen)(2), PF01391 (Collagen triple helix repeat (20 copies))(19), PF07054 (Pericardin like repeat)(3)contains similarity to Interpro domains IPR009765 (Pericardin like), IPR008161 (Collagen helix repeat), IPR001442 (Type 4 procollagen, C-terminal repeat), IPR008160 (Collagen triple helix repeat) | ||||
| Origin | From_laboratory | HX | |||
| Species | Caenorhabditis elegans | ||||
| Properties | Coding | CDS | |||
| Prediction_status | Partially_confirmed | ||||
| Isoform | Accession_evidence | NDB | AU200237 | ||
| Visible | Gene | K04H4.1 | |||
| Corresponding_transcript | K04H4.1b | ||||
| Corresponding_protein | WP:CE36390 | ||||
| Corresponding_PCR_product | cenix:320-a12 | ||||
| sjj_K04H4.1 | |||||
| TH:320A12 | |||||
| mv_CAA40299 | |||||
| Corresponding_RNAi_reagent | Cenix:320-a12 | ||||
| sjj_K04H4.1 | |||||
| TH:320A12 | |||||
| Matching_cDNA | yk776h06.5 | Inferred_automatically | transcript_builder.pl | ||
| CEESO09F | Inferred_automatically | transcript_builder.pl | |||
| yk1645h01.5 | Inferred_automatically | transcript_builder.pl | |||
| yk1062a05.3 | Inferred_automatically | transcript_builder.pl | |||
| yk1561a08.3 | Inferred_automatically | transcript_builder.pl | |||
| yk1539e05.3 | Inferred_automatically | transcript_builder.pl | |||
| yk654a8.3 | Inferred_automatically | transcript_builder.pl | |||
| yk1313a04.3 | Inferred_automatically | transcript_builder.pl | |||
| yk1708c06.3 | Inferred_automatically | transcript_builder.pl | |||
| yk95b4.3 | Inferred_automatically | transcript_builder.pl | |||
| yk95b4.5 | Inferred_automatically | transcript_builder.pl | |||
| yk1113c11.3 | Inferred_automatically | transcript_builder.pl | |||
| yk1202a01.5 | Inferred_automatically | transcript_builder.pl | |||
| yk1053c02.3 | Inferred_automatically | transcript_builder.pl | |||
| CK577532 | Inferred_automatically | transcript_builder.pl | |||
| yk1053c02.5 | Inferred_automatically | transcript_builder.pl | |||
| yk1285d05.5 | Inferred_automatically | transcript_builder.pl | |||
| yk1426d07.3 | Inferred_automatically | transcript_builder.pl | |||
| yk1113c11.5 | Inferred_automatically | transcript_builder.pl | |||
| yk1603d01.3 | Inferred_automatically | transcript_builder.pl | |||
| yk1068f08.3 | Inferred_automatically | transcript_builder.pl | |||
| yk90c8.5 | Inferred_automatically | transcript_builder.pl | |||
| yk1561a08.5 | Inferred_automatically | transcript_builder.pl | |||
| yk1285a06.5 | Inferred_automatically | transcript_builder.pl | |||
| yk1068f08.5 | Inferred_automatically | transcript_builder.pl | |||
| yk1068c10.5 | Inferred_automatically | transcript_builder.pl | |||
| yk1068c10.3 | Inferred_automatically | transcript_builder.pl | |||
| yk90c8.3 | Inferred_automatically | transcript_builder.pl | |||
| yk755c11.3 | Inferred_automatically | transcript_builder.pl | |||
| yk1426d07.5 | Inferred_automatically | transcript_builder.pl | |||
| yk1285d05.3 | Inferred_automatically | transcript_builder.pl | |||
| yk1645h01.3 | Inferred_automatically | transcript_builder.pl | |||
| CK582656 | Inferred_automatically | transcript_builder.pl | |||
| yk284d3.3 | Inferred_automatically | transcript_builder.pl | |||
| yk878c05.5 | Inferred_automatically | transcript_builder.pl | |||
| yk501e3.5 | Inferred_automatically | transcript_builder.pl | |||
| yk108f8.3 | Inferred_automatically | transcript_builder.pl | |||
| yk1029f07.3 | Inferred_automatically | transcript_builder.pl | |||
| yk425h10.5 | Inferred_automatically | transcript_builder.pl | |||
| yk1278a06.3 | Inferred_automatically | transcript_builder.pl | |||
| yk1285a06.3 | Inferred_automatically | transcript_builder.pl | |||
| yk1062a05.5 | Inferred_automatically | transcript_builder.pl | |||
| yk1539e05.5 | Inferred_automatically | transcript_builder.pl | |||
| yk1473d12.3 | Inferred_automatically | transcript_builder.pl | |||
| CK577629 | Inferred_automatically | transcript_builder.pl | |||
| yk284d3.5 | Inferred_automatically | transcript_builder.pl | |||
| yk878c05.3 | Inferred_automatically | transcript_builder.pl | |||
| yk776h06.3 | Inferred_automatically | transcript_builder.pl | |||
| yk1029f07.5 | Inferred_automatically | transcript_builder.pl | |||
| yk108f8.5 | Inferred_automatically | transcript_builder.pl | |||
| yk1708c06.5 | Inferred_automatically | transcript_builder.pl | |||
| CK577597 | Inferred_automatically | transcript_builder.pl | |||
| yk425h10.3 | Inferred_automatically | transcript_builder.pl | |||
| yk1202a01.3 | Inferred_automatically | transcript_builder.pl | |||
| yk1278a06.5 | Inferred_automatically | transcript_builder.pl | |||
| yk1313a04.5 | Inferred_automatically | transcript_builder.pl | |||
| RNAi_result | JA:K04H4.1 | ||||
| Simmer:K04H4.1 | |||||
| TH:320A12 | |||||
| Cenix:320-a12 | |||||
| WB_RNAi_result (5) | |||||
| GO_term (12) | |||||
| Variation | uCE3-1102 | ||||
| uCE3-1103 | |||||
| Microarray_results | SMD_K04H4.1 | ||||
| 173790_at | |||||
| 190353_s_at | |||||
| Aff_K04H4.1 | |||||
| Brief_identification | collagen | ||||
| Y2H_target | Y2H007361 | ||||
| Y2H010508 | |||||
| Remark | [alt] Alternate isoform defined by EST yk776h06. | ||||
| [031014 pad] Gene prediction created to represent the EST yk776h06. | |||||
| Associated_feature | WBsf006352 | ||||
| WBsf007241 | |||||
| Method | curated |
