![Adult](JavaScript:void
window.open("/cgi-bin/rnaidb/popUpImage.cgi?imgName=N2wormfinal.png",
"RNAiDB Help","toolbar=no, location=no, directories=no,
status=no, menubar=no, scrollbars=yes, resizable=no,
copyhistory=no, width=1000, height=550"))
CDS: R13G10.1
| R13G10.1 | SMap | S_parent | Sequence | R13G10 | |
|---|---|---|---|---|---|
| Structure | Source_exons (12) | ||||
| DB_info | Database | SwissProt | SwissProt_ID | DPY27_CAEEL | |
| SwissProt_AC | P48996 | ||||
| NDB | GI_number | 3879216 | |||
| NCBI | RefSeq | NM_065370 | |||
| Protein_id | R13G10 | CAA84669 | 1 | ||
| DB_remark | C. elegans DPY-27 protein; contains similarity to Pfam domains PF06470 (SMC proteins Flexible Hinge Domain), PF02463 (RecF/RecN/SMC N terminal domain), contains similarity to Interpro domains IPR003439 (ABC transporter related), IPR003395 (SMC protein, N-terminal), IPR010935 (SMCs flexible hinge), IPR003405 (Structural maintenance of chromosome protein SMC, C-terminal) | ||||
| Origin | From_laboratory | HX | |||
| Species | Caenorhabditis elegans | ||||
| Properties | Coding | CDS | |||
| Prediction_status | Partially_confirmed | ||||
| Visible | Gene | R13G10.1 | |||
| Corresponding_transcript | R13G10.1 | ||||
| Corresponding_protein | WP:CE01052 | ||||
| Corresponding_PCR_product | cenix:321-f2 | ||||
| sjj_R13G10.1 | |||||
| TH:321F2 | |||||
| mv_AAA62647 | |||||
| Corresponding_RNAi_reagent | Cenix:321-f2 | ||||
| sjj_R13G10.1 | |||||
| TH:321F2 | |||||
| Matching_cDNA (32) | |||||
| RNAi_result (5) | |||||
| WB_RNAi_result (5) | |||||
| GO_term (13) | |||||
| Variation | uCE3-842 | ||||
| uCE3-843 | |||||
| Microarray_results | SMD_R13G10.1 | ||||
| 171990_x_at | |||||
| 188603_s_at | |||||
| Aff_R13G10.1 | |||||
| Brief_identification | chromosome segregation protein (SMC-1) | ||||
| Remark | Similarity with many coiled-coil proteins | ||||
| The high scoring splice site at 9292 was not used and an exon predicted by genefinder (10707..10974) was removed to improve the similarity with the yeast SMC-1 protein | |||||
| Method | curated |
