CDS: T02G5.9b
T02G5.9b | SMap | S_parent | Sequence | T02G5 | |
---|---|---|---|---|---|
Structure | Source_exons | 1 | 104 | ||
169 | 750 | ||||
799 | 1376 | ||||
1425 | 1951 | ||||
DB_info | Database (3) | ||||
Protein_id | T02G5 | AAK68395 | 1 | ||
DB_remark | C. elegans KRS-1 protein; contains similarity to Pfam domains PF01336 (OB-fold nucleic acid binding domain), PF00152 (tRNA synthetases class II (D, K and N))contains similarity to Interpro domains IPR006195 (Aminoacyl-transfer RNA synthetase, class II), IPR004364 (tRNA synthetase, class II (D, K and N)), IPR002313 (Lysyl-tRNA synthetase, class-2), IPR012340 (Nucleic acid-binding, OB-fold, subgroup), IPR004365 (nucleic acid binding, OB-fold, tRNA/helicase-type) | ||||
Origin | From_laboratory | RW | |||
Species | Caenorhabditis elegans | ||||
Properties | Coding | CDS | |||
Prediction_status | Confirmed | ||||
Isoform | Accession_evidence | EMBL | CEC1361 | ||
Visible | Gene | T02G5.9 | |||
Corresponding_transcript | T02G5.9b | ||||
Corresponding_protein | WP:CE28247 | ||||
Corresponding_PCR_product | cenix:149-d6 | ||||
mv_T02G5.9 | |||||
sjj_T02G5.9 | |||||
smd_T02G5.9 | |||||
Corresponding_RNAi_reagent | Cenix:149-d6 | ||||
sjj_T02G5.9 | |||||
Matching_cDNA | yk1565a12.5 | Inferred_automatically | transcript_builder.pl | ||
RNAi_result | Cenix:149-d6 | ||||
JA:T02G5.9 | |||||
Simmer:T02G5.9 | |||||
WB_RNAi_result | JA:T02G5.9 | ||||
Simmer:T02G5.9 | |||||
MV_SV:mv_T02G5.9 | |||||
Cenix:149-d6 | |||||
GO_term (15) | |||||
Microarray_results | SMD_T02G5.9:2 | ||||
SMD_T02G5.9 | |||||
Brief_identification | lysyl-tRNA synthetase | ||||
Remark | split into 2 genes on 2001-05-29 | ||||
alternate first exon by yk156h11.5 | |||||
this isoform is based on EMBL accession CEC1361 | |||||
Associated_feature | WBsf015966 | ||||
Method | curated |