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CDS: T03G6.2a
| T03G6.2a | SMap | S_parent | Sequence | T03G6 | |
|---|---|---|---|---|---|
| Structure | Source_exons (12) | ||||
| DB_info | Database | SwissProt | SwissProt_ID | NHR40_CAEEL | |
| SwissProt_AC | Q22127 | ||||
| NDB | GI_number | 21629461 | |||
| Protein_id | T03G6 | AAM69089 | 1 | ||
| DB_remark | C. elegans NHR-40 protein; contains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor), PF00105 (Zinc finger, C4 type (two domains))contains similarity to Interpro domains IPR000324 (Vitamin D receptor), IPR000536 (Nuclear hormone receptor, ligand-binding), IPR001628 (Nuclear hormone receptor, DNA-binding) | ||||
| Origin | From_laboratory | RW | |||
| Species | Caenorhabditis elegans | ||||
| Properties | Coding | CDS | |||
| Prediction_status | Confirmed | ||||
| Isoform | Accession_evidence | EMBL | AF273782 | ||
| Visible | Gene | T03G6.2 | |||
| Corresponding_transcript | T03G6.2a | ||||
| Corresponding_protein | WP:CE31227 | ||||
| Corresponding_PCR_product | cenix:127-g1 | ||||
| mv_T03G6.2 | |||||
| sjj_T03G6.2 | |||||
| Corresponding_RNAi_reagent | Cenix:127-g1 | ||||
| Matching_cDNA | AF273782 | Inferred_automatically | transcript_builder.pl | ||
| yk213d2.3 | Inferred_automatically | transcript_builder.pl | |||
| yk1414a12.5 | Inferred_automatically | transcript_builder.pl | |||
| RNAi_result | Cenix:127-g1 | ||||
| WB_RNAi_result | SA:yk213d2 | ||||
| MV_SV:mv_T03G6.2 | |||||
| Cenix:127-g1 | |||||
| GO_term (6) | |||||
| Variation | ok667 | ||||
| snp_T03G6[1] | |||||
| snp_T03G6[2] | |||||
| Microarray_results | SMD_T03G6.2 | ||||
| 175720_at | |||||
| 194035_s_at | |||||
| Aff_T03G6.2 | |||||
| Brief_identification | steroid/thyroid/retinoic nuclear hormone receptor family | ||||
| Remark | derived from T03G6.2 on 2001-05-29 | ||||
| new first exon by yk213d2.5 | |||||
| [20020624 db] added several C-terminal exons based on mRNA data | |||||
| this isoform is based on EMBL accession AF273782 | |||||
| Associated_feature | WBsf019345 | ||||
| Method | curated |
