VZK822L.1 | SMap | S_parent | Sequence | VZK822L
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| Chromosome | IV |
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Identity (5)
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Gene_info
| Gene_class | fat
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| | Allele | tm331
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GO_term (6)
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Structured_description
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Provisional_description
| fat-6 encodes a delta-9 fatty acid desaturase that is predicted to be mitochondrial. |
Paper_evidence
| WBPaper00004149
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| | | | | | WBPaper00004424
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| | | | | | WBPaper00013538
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| | | | | | WBPaper00013550
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| | | | | Person_evidence | WBPerson567
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| | | | | Curator_confirmed | WBPerson567
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| | | | | Date_last_updated | 17 Jun 2004 00:00:00 |
| | | | When expressed heterologously in S. cerevisiae, it rescues the fatty acid auxotrophy of the yeast delta-9 desaturase mutant ole1. |
| | | | FAT-6 readily desaturates stearic acid (18:0), or similar fatty acids (17:0 or 18:1 delta-11 trans), but shows less activity on palmitic acid (16:0), and no activity on other medium chain fatty acids (14:0 or 15:0). |
| | | | This resembles FAT-7 while contrasting with FAT-5, which readily desaturates palmitic acid (16:0), but shows nearly undetectable activity on the common delta9 substrate stearic acid. |
| | | | FAT-6 belongs to a family of diiron-oxo integral membrane proteins that use cytochrome b5 and NADH-cytochrome b5 reductase as cofactors, and whose protein sequences contain conserved motifs consisting of three histidine-rich sequences (H-boxes) and two long stretches (>40 residues each) of hydrophobic residues; the H-boxes are thought to coordinate the diiron-oxo structure at the active sites, while the hydrophobic stretches are thought to bind the lipid bilayer and put H-boxes into an active site. |
| | | | Each histidine residue in the H-boxes is required for function when assayed by site-directed mutagenesis. |
| | | | This gene encodes a protein predicted by Eisenberg and coworkers, with 52% accuracy, to be mitochondrial. |
| | | | Proteins localized to a given organelle by experiments tend to share a characteristic phylogenetic distribution of their homologs, called a phylogenetic profile. |
| | | | For instance, mitochondrial proteins can be identified effectively by their phylogenetic profiles. |
| | | | By applying phylogenetic profile analysis to the C. elegans genome, Eisenberg and coworkers inferred that this gene, along with 2-4% of all the nuclear genes in C. elegans, encodes a mitochondrial protein. |
| | | | The large fraction of organism-specific and eukaryote-derived genes suggests that C. elegans mitochondria perform specialized roles absent from prokaryotic mitochondrial ancestors. |
| | | Concise_description | fat-6 encodes a delta-9 fatty acid desaturase that is predicted to be mitochondrial. |
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Molecular_info (6)
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Experimental_info
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RNAi_result
| Cenix:213-g3
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| | | JA:VZK822l.1
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| | | Simmer:VZK822L.1
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WB_RNAi_result (8)
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Reference (7)
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Remark (2)
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| Method | Gene
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