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CDS: W02B9.1b   

W02B9.1bSMapS_parentSequenceSUPERLINK_CB_IR
Structure Source_exons (31)
DB_info Database TREMBL Q967F4_CAEEL
TrEMBL_AC Q967F4
NDB GI_number 19571708
Protein_id W02B9 CAD276111
Y52B11B CAD276191
ZK39 CAD276201
DB_remarkC. elegans HMR-1 protein; contains similarity to Pfam domains PF02210 (Laminin G domain), PF00054 (Laminin G domain), PF00028 (Cadherin domain)(13), PF01049 (Cadherin cytoplasmic region)contains similarity to Interpro domains IPR002048 (Calcium-binding EF-hand), IPR000742 (EGF-like, subtype 2), IPR001791 (Laminin G), IPR000233 (Cadherin cytoplasmic region), IPR006209 (EGF-like), IPR000152 (Aspartic acid and asparagine hydroxylation site), IPR006210 (Type I EGF), IPR002126 (Cadherin), IPR012680 (Laminin G, subdomain 2)
Origin From_laboratoryHX
SpeciesCaenorhabditis elegans
Properties Coding CDS
Prediction_statusPartially_confirmed
Isoform Accession_evidenceNDB BJ146256
Inferred_automaticallytranscript_builder
Visible GeneW02B9.1
Corresponding_transcriptW02B9.1b
Corresponding_proteinWP:CE30357
Corresponding_PCR_product cenix:81-f1
cenix:141-f9
cenix:172-e4
sjj_W02B9.1
sjj_Y52B11B.2
sjj_ZK39.1
mv_AAB94553
mv_Y52B11B.2
mv_ZK39.1
smd_1W02B9.1
Corresponding_RNAi_reagent (6)
Matching_cDNA (51)
RNAi_result (8)
WB_RNAi_result (9)
GO_term (8)
Variation (7)
Microarray_results (10)
Brief_identificationcadherin
Remark[020221 kj] ZK39.1, Y52B11B.2 and W02B9.1 were merged according to mRNA evidence (AJ307058), thereby creating W02B9.1b. Y52B11.2 was annotated using Pfam (11 cadherin domains).
Methodcurated