![Adult](JavaScript:void
window.open("/cgi-bin/rnaidb/popUpImage.cgi?imgName=N2wormfinal.png",
"RNAiDB Help","toolbar=no, location=no, directories=no,
status=no, menubar=no, scrollbars=yes, resizable=no,
copyhistory=no, width=1000, height=550"))
CDS: W02B9.1b
| W02B9.1b | SMap | S_parent | Sequence | SUPERLINK_CB_IR | |
|---|---|---|---|---|---|
| Structure | Source_exons (31) | ||||
| DB_info | Database | TREMBL | Q967F4_CAEEL | ||
| TrEMBL_AC | Q967F4 | ||||
| NDB | GI_number | 19571708 | |||
| Protein_id | W02B9 | CAD27611 | 1 | ||
| Y52B11B | CAD27619 | 1 | |||
| ZK39 | CAD27620 | 1 | |||
| DB_remark | C. elegans HMR-1 protein; contains similarity to Pfam domains PF02210 (Laminin G domain), PF00054 (Laminin G domain), PF00028 (Cadherin domain)(13), PF01049 (Cadherin cytoplasmic region)contains similarity to Interpro domains IPR002048 (Calcium-binding EF-hand), IPR000742 (EGF-like, subtype 2), IPR001791 (Laminin G), IPR000233 (Cadherin cytoplasmic region), IPR006209 (EGF-like), IPR000152 (Aspartic acid and asparagine hydroxylation site), IPR006210 (Type I EGF), IPR002126 (Cadherin), IPR012680 (Laminin G, subdomain 2) | ||||
| Origin | From_laboratory | HX | |||
| Species | Caenorhabditis elegans | ||||
| Properties | Coding | CDS | |||
| Prediction_status | Partially_confirmed | ||||
| Isoform | Accession_evidence | NDB | BJ146256 | ||
| Inferred_automatically | transcript_builder | ||||
| Visible | Gene | W02B9.1 | |||
| Corresponding_transcript | W02B9.1b | ||||
| Corresponding_protein | WP:CE30357 | ||||
| Corresponding_PCR_product (10) | |||||
| Corresponding_RNAi_reagent (6) | |||||
| Matching_cDNA | yk1230g08.3 | Inferred_automatically | transcript_builder.pl | ||
| yk508b8.5 | Inferred_automatically | transcript_builder.pl | |||
| yk336g7.5 | Inferred_automatically | transcript_builder.pl | |||
| yk612g4.3 | Inferred_automatically | transcript_builder.pl | |||
| yk433g4.5 | Inferred_automatically | transcript_builder.pl | |||
| yk612g4.5 | Inferred_automatically | transcript_builder.pl | |||
| yk862f06.3 | Inferred_automatically | transcript_builder.pl | |||
| yk459a9.5 | Inferred_automatically | transcript_builder.pl | |||
| yk32b12.3 | Inferred_automatically | transcript_builder.pl | |||
| yk1112d02.3 | Inferred_automatically | transcript_builder.pl | |||
| yk623f8.5 | Inferred_automatically | transcript_builder.pl | |||
| yk862f06.5 | Inferred_automatically | transcript_builder.pl | |||
| yk1602h08.3 | Inferred_automatically | transcript_builder.pl | |||
| yk514a2.5 | Inferred_automatically | transcript_builder.pl | |||
| yk612c5.5 | Inferred_automatically | transcript_builder.pl | |||
| yk623f8.3 | Inferred_automatically | transcript_builder.pl | |||
| yk514a2.3 | Inferred_automatically | transcript_builder.pl | |||
| yk172e12.5 | Inferred_automatically | transcript_builder.pl | |||
| yk790b03.5 | Inferred_automatically | transcript_builder.pl | |||
| yk84f11.5 | Inferred_automatically | transcript_builder.pl | |||
| yk266b4.3 | Inferred_automatically | transcript_builder.pl | |||
| yk1546d07.3 | Inferred_automatically | transcript_builder.pl | |||
| yk261g2.5 | Inferred_automatically | transcript_builder.pl | |||
| yk672b12.3 | Inferred_automatically | transcript_builder.pl | |||
| AJ307058 | Inferred_automatically | transcript_builder.pl | |||
| yk342e7.5 | Inferred_automatically | transcript_builder.pl | |||
| yk1129a11.3 | Inferred_automatically | transcript_builder.pl | |||
| yk84f11.3 | Inferred_automatically | transcript_builder.pl | |||
| yk351d10.5 | Inferred_automatically | transcript_builder.pl | |||
| yk185f1.5 | Inferred_automatically | transcript_builder.pl | |||
| yk1058c10.5 | Inferred_automatically | transcript_builder.pl | |||
| yk1112d02.5 | Inferred_automatically | transcript_builder.pl | |||
| yk105b7.5 | Inferred_automatically | transcript_builder.pl | |||
| yk1230g08.5 | Inferred_automatically | transcript_builder.pl | |||
| yk662b10.3 | Inferred_automatically | transcript_builder.pl | |||
| yk342e7.3 | Inferred_automatically | transcript_builder.pl | |||
| yk680f12.5 | Inferred_automatically | transcript_builder.pl | |||
| yk530g12.5 | Inferred_automatically | transcript_builder.pl | |||
| yk611f6.5 | Inferred_automatically | transcript_builder.pl | |||
| yk1129a11.5 | Inferred_automatically | transcript_builder.pl | |||
| yk209c6.5 | Inferred_automatically | transcript_builder.pl | |||
| yk237c9.5 | Inferred_automatically | transcript_builder.pl | |||
| yk105b7.3 | Inferred_automatically | transcript_builder.pl | |||
| yk534d2.5 | Inferred_automatically | transcript_builder.pl | |||
| yk389f8.5 | Inferred_automatically | transcript_builder.pl | |||
| yk662b10.5 | Inferred_automatically | transcript_builder.pl | |||
| yk612c5.3 | Inferred_automatically | transcript_builder.pl | |||
| yk32b12.5 | Inferred_automatically | transcript_builder.pl | |||
| yk1602h08.5 | Inferred_automatically | transcript_builder.pl | |||
| yk371e12.5 | Inferred_automatically | transcript_builder.pl | |||
| yk346d12.3 | Inferred_automatically | transcript_builder.pl | |||
| RNAi_result (8) | |||||
| WB_RNAi_result (9) | |||||
| GO_term (8) | |||||
| Variation (7) | |||||
| Microarray_results (10) | |||||
| Brief_identification | cadherin | ||||
| Remark | [020221 kj] ZK39.1, Y52B11B.2 and W02B9.1 were merged according to mRNA evidence (AJ307058), thereby creating W02B9.1b. Y52B11.2 was annotated using Pfam (11 cadherin domains). | ||||
| Method | curated |
