Go to RNAiDB Home Adult Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie
 

Gene: Y116A8C.42   

Y116A8C.42EvidencePaper_evidenceWBPaper00005457
SMapS_parentSequenceY116A8C
ChromosomeIV
Identity Version1
Name (7)
SpeciesCaenorhabditis elegans
HistoryVersion_change107 Apr 2004 11:29:36WBPerson1971 EventImportedInitial conversion from geneace
StatusLive
Gene_info Gene_classsnr
GO_term (4)
Structured_description Provisional_descriptionsnr-1 encodes an ortholog of human small nuclear ribonucleoprotein Sm D3, a protein that forms part of a heptameric complex required for the biogenesis and function of the snRNPs that catalyze mRNA splicing; in combination with the gene that encodes the human Sm B ortholog (snr-2) snr-1 affects embryonic viability and the nuclear association and localization of P granules in embryos based on an RNAi assay, and also affects embryonic viability, growth, and fertility based on large-scale RNAi assays; snr-1 is expressed in embryos and is expressed in larvae and adults in muscles of the alimentary system, in body-wall muscle, in seam cells and other unidentified cells in larvae and in adults. Paper_evidence WBPaper00005457
WBPaper00005654
WBPaper00006395
RNAi_evidenceWBRNAi00055460
Curator_confirmedWBPerson48
Date_last_updated11 Jul 2005 00:00:00
Concise_descriptionsnr-1 encodes an ortholog of human small nuclear ribonucleoprotein Sm D3, a protein that forms part of a heptameric complex required for the biogenesis and function of the snRNPs that catalyze mRNA splicing; in combination with the gene that encodes the human Sm B ortholog (snr-2) snr-1 affects embryonic viability and the nuclear association and localization of P granules in embryos based on an RNAi assay, and also affects embryonic viability, growth, and fertility based on large-scale RNAi assays; snr-1 is expressed in embryos and is expressed in larvae and adults in muscles of the alimentary system, in body-wall muscle, in seam cells and other unidentified cells in larvae and in adults.
Sequence_featuressnr-1 encodes an ortholog of human small nuclear ribonucleoprotein SmD3, a protein that forms part of a heptameric complex required for the biogenesis and function of the snRNPs that catalyze mRNA splicing.Curator_confirmedWBPerson48
Biological_process In combination with the gene that encodes the human SmB ortholog (snr-2), snr-1 affects embryonic viability and the nuclear association and localization of P granules in embryos based on an RNAi assay.Paper_evidenceWBPaper00005457
Curator_confirmedWBPerson48
snr-1 affects embryonic viability, growth, and fertility based on large-scale RNAi assays.Paper_evidenceWBPaper00005654
Curator_confirmedWBPerson48
snr-1 affects embryonic viability based on large-scale RNAi assays.RNAi_evidenceWBRNAi00055460
Curator_confirmedWBPerson48
snr-1 affects fertility based on large-scale RNAi assays.Paper_evidenceWBPaper00006395
Curator_confirmedWBPerson48
Expression snr-1 is expressed in larvae and in adults in muscles of the alimentary system, in body-wall muscle, in seam cells and other unidentified cells.Expr_pattern_evidenceExpr5686
Curator_confirmedWBPerson48
snr-1 is expressed in embryos and in adult gonads.Expr_pattern_evidenceExpr2229
Curator_confirmedWBPerson48
Molecular_info Corresponding_CDSY116A8C.42
Corresponding_proteinWP:CE23346
KOGKOG3172
Corresponding_PCR_product smd_Y116A8C.42
sjj_Y116A8C.42
Corresponding_RNAi_reagent (5)
Other_sequenceU23937
Experimental_info RNAi_result Cenix:38-f4
JA:Y116A8C.42
Simmer:Y116A8C.42
WB_RNAi_result JA:Y116A8C.42
Simmer:Y116A8C.42
MV_SV:mv_Y116A8C.42
Cenix:38-f4
Expr_pattern Expr2229
Expr5101
ReferenceWBPaper00005457
MethodGene