Y116A8C.42 | Evidence | Paper_evidence | WBPaper00005457
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| SMap | S_parent | Sequence | Y116A8C
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| Chromosome | IV |
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Identity (5)
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Gene_info
| Gene_class | snr
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| |
GO_term
| GO:0006397
| IEA
| Inferred_automatically |
| | | GO:0030529
| IEA
| Inferred_automatically |
| | | GO:0005634
| IEA
| Inferred_automatically |
| | | GO:0005732
| IEA
| Inferred_automatically |
| |
Structured_description
| Provisional_description | snr-1 encodes an ortholog of human small nuclear ribonucleoprotein Sm D3, a protein that forms part of a heptameric complex required for the biogenesis and function of the snRNPs that catalyze mRNA splicing; in combination with the gene that encodes the human Sm B ortholog (snr-2) snr-1 affects embryonic viability and the nuclear association and localization of P granules in embryos based on an RNAi assay, and also affects embryonic viability, growth, and fertility based on large-scale RNAi assays; snr-1 is expressed in embryos and is expressed in larvae and adults in muscles of the alimentary system, in body-wall muscle, in seam cells and other unidentified cells in larvae and in adults. |
Paper_evidence
| WBPaper00005457
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| | | | | | WBPaper00005654
|
| | | | | | WBPaper00006395
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| | | | | RNAi_evidence | WBRNAi00055460
|
| | | | | Curator_confirmed | WBPerson48
|
| | | | | Date_last_updated | 11 Jul 2005 00:00:00 |
| | | Concise_description | snr-1 encodes an ortholog of human small nuclear ribonucleoprotein Sm D3, a protein that forms part of a heptameric complex required for the biogenesis and function of the snRNPs that catalyze mRNA splicing; in combination with the gene that encodes the human Sm B ortholog (snr-2) snr-1 affects embryonic viability and the nuclear association and localization of P granules in embryos based on an RNAi assay, and also affects embryonic viability, growth, and fertility based on large-scale RNAi assays; snr-1 is expressed in embryos and is expressed in larvae and adults in muscles of the alimentary system, in body-wall muscle, in seam cells and other unidentified cells in larvae and in adults. |
| | | Sequence_features | snr-1 encodes an ortholog of human small nuclear ribonucleoprotein SmD3, a protein that forms part of a heptameric complex required for the biogenesis and function of the snRNPs that catalyze mRNA splicing. | Curator_confirmed | WBPerson48
|
| | |
Biological_process
| In combination with the gene that encodes the human SmB ortholog (snr-2), snr-1 affects embryonic viability and the nuclear association and localization of P granules in embryos based on an RNAi assay. | Paper_evidence | WBPaper00005457
|
| | | | | Curator_confirmed | WBPerson48
|
| | | | snr-1 affects embryonic viability, growth, and fertility based on large-scale RNAi assays. | Paper_evidence | WBPaper00005654
|
| | | | | Curator_confirmed | WBPerson48
|
| | | | snr-1 affects embryonic viability based on large-scale RNAi assays. | RNAi_evidence | WBRNAi00055460
|
| | | | | Curator_confirmed | WBPerson48
|
| | | | snr-1 affects fertility based on large-scale RNAi assays. | Paper_evidence | WBPaper00006395
|
| | | | | Curator_confirmed | WBPerson48
|
| | |
Expression
| snr-1 is expressed in larvae and in adults in muscles of the alimentary system, in body-wall muscle, in seam cells and other unidentified cells. | Expr_pattern_evidence | Expr5686
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| | | | | Curator_confirmed | WBPerson48
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| | | | snr-1 is expressed in embryos and in adult gonads. | Expr_pattern_evidence | Expr2229
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| | | | | Curator_confirmed | WBPerson48
|
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Molecular_info
| Corresponding_CDS | Y116A8C.42
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| | Corresponding_protein | WP:CE23346
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| | KOG | KOG3172
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Corresponding_PCR_product
| smd_Y116A8C.42
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| | | sjj_Y116A8C.42
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Corresponding_RNAi_reagent (5)
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| | Other_sequence | U23937
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Experimental_info
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RNAi_result
| Cenix:38-f4
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| | | JA:Y116A8C.42
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| | | Simmer:Y116A8C.42
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WB_RNAi_result
| JA:Y116A8C.42
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| | | Simmer:Y116A8C.42
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| | | MV_SV:mv_Y116A8C.42
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| | | Cenix:38-f4
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Expr_pattern
| Expr2229
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| | | Expr5101
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| Reference | WBPaper00005457
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| Method | Gene
|