RNAiDB Tree View

CDS: Y22F5A.1

Y22F5A.1	SMap	S_parent	Sequence	Y22F5A
	Structure	Source_exons (7)
	DB_info	Database	TREMBL	O62412_CAEEL
				TrEMBL_AC	O62412
			NDB	GI_number	62550970
		Protein_id	Y22F5A	CAA16320	2
		DB_remark	C. elegans NHR-232 protein; contains similarity to Pfam domains PF00104 (Ligand-binding domain of nuclear hormone receptor), PF00105 (Zinc finger, C4 type (two domains))contains similarity to Interpro domains IPR000536 (Nuclear hormone receptor, ligand-binding), IPR001628 (Nuclear hormone receptor, DNA-binding)
	Origin	From_laboratory	HX
		Species	Caenorhabditis elegans
	Properties	Coding	CDS
			Prediction_status	Partially_confirmed
	Visible	Gene	Y22F5A.1
		Corresponding_transcript	Y22F5A.1
		Corresponding_protein	WP:CE38441
		Corresponding_PCR_product	cenix:26-a7
			mv_Y22F5A.1
			sjj_Y22F5A.1
			sjj_Y22F5A.2
		Corresponding_RNAi_reagent	Cenix:26-a7
			sjj_Y22F5A.1
			sjj_Y22F5A.2
		Matching_cDNA	OSTF182A3_1	Inferred_automatically	transcript_builder.pl
		RNAi_result	Cenix:26-a7
			JA:Y22F5A.1
		WB_RNAi_result	JA:Y22F5A.1
			JA:Y22F5A.2
			MV_SV:mv_Y22F5A.1
			Cenix:26-a7
		GO_term	GO:0003700	IEA	Inferred_automatically
			GO:0006355	IEA	Inferred_automatically
			GO:0005634	IEA	Inferred_automatically
			GO:0003707	IEA	Inferred_automatically
		Variation	tm1546
		Microarray_results	SMD_Y22F5A.1
			SMD_Y22F5A.2
			192564_at
			Aff_Y22F5A.1
		Brief_identification	Zinc finger, C4 type (two domains)
		Remark	Annotated using Pfam
			[050321 pad] Gene prediction extended 3' based on briggsae homology and also removed abnormally small intron.
	Method	curated