CDS: Y54E10A.4b
Y54E10A.4b | SMap | S_parent | Sequence | Y54E10A | |
---|---|---|---|---|---|
Structure | Source_exons (9) | ||||
DB_info | Database | TREMBL | Q9GNI9_CAEEL | ||
TrEMBL_AC | Q9GNI9 | ||||
NDB | GI_number | 14574397 | |||
Protein_id | Y54E10A | AAK68519 | 1 | ||
DB_remark | C. elegans FOG-1 protein; contains similarity to Pfam domain PF00076 (RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain))contains similarity to Interpro domains IPR012677 (Nucleotide-binding, alpha-beta plait), IPR000504 (RNA-binding region RNP-1 (RNA recognition motif)), IPR007087 (Zinc finger, C2H2-type) | ||||
Origin | From_laboratory | RW | |||
Species | Caenorhabditis elegans | ||||
Properties | Coding | CDS | |||
Prediction_status | Confirmed | ||||
Isoform | Accession_evidence | EMBL | BJ789142 | ||
Inferred_automatically | transcript_builder | ||||
Visible | Gene | Y54E10A.4 | |||
Corresponding_transcript | Y54E10A.4b | ||||
Corresponding_protein | WP:CE27480 | ||||
Corresponding_PCR_product | cenix:229-a12 | ||||
mv_Y54E10A.4 | |||||
sjj_Y54E10A_156.d | |||||
Corresponding_RNAi_reagent | Cenix:229-a12 | ||||
Matching_cDNA (5) | |||||
RNAi_result | Cenix:229-a12 | ||||
WB_RNAi_result | Cenix:229-a12 | ||||
GO_term | GO:0000166 | IEA | Inferred_automatically | ||
GO:0003676 | IEA | Inferred_automatically | |||
GO:0008270 | IEA | Inferred_automatically | |||
GO:0005634 | IEA | Inferred_automatically | |||
Variation (32) | |||||
Microarray_results | SMD_Y54E10A_156.D | ||||
177117_at | |||||
Aff_Y54E10A_156.D | |||||
Remark | removed last exon and split Y54E10A.17 off this based on mRNA data 010419 db | ||||
SL1 trans-spliced; see AJ297846 | |||||
Associated_feature | WBsf000176 | ||||
WBsf000178 | |||||
Method | curated |