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CDS: Y54E10A.4b   

Y54E10A.4bSMapS_parentSequenceY54E10A
Structure Source_exons (9)
DB_info Database TREMBL Q9GNI9_CAEEL
TrEMBL_AC Q9GNI9
NDB GI_number 14574397
Protein_idY54E10A AAK685191
DB_remarkC. elegans FOG-1 protein; contains similarity to Pfam domain PF00076 (RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain))contains similarity to Interpro domains IPR012677 (Nucleotide-binding, alpha-beta plait), IPR000504 (RNA-binding region RNP-1 (RNA recognition motif)), IPR007087 (Zinc finger, C2H2-type)
Origin From_laboratoryRW
SpeciesCaenorhabditis elegans
Properties Coding CDS
Prediction_statusConfirmed
Isoform Accession_evidenceEMBL BJ789142
Inferred_automaticallytranscript_builder
Visible GeneY54E10A.4
Corresponding_transcriptY54E10A.4b
Corresponding_proteinWP:CE27480
Corresponding_PCR_product cenix:229-a12
mv_Y54E10A.4
sjj_Y54E10A_156.d
Corresponding_RNAi_reagentCenix:229-a12
Matching_cDNA (5)
RNAi_resultCenix:229-a12
WB_RNAi_resultCenix:229-a12
GO_term GO:0000166 IEA Inferred_automatically
GO:0003676 IEA Inferred_automatically
GO:0008270 IEA Inferred_automatically
GO:0005634 IEA Inferred_automatically
Variation (32)
Microarray_results SMD_Y54E10A_156.D
177117_at
Aff_Y54E10A_156.D
Remark removed last exon and split Y54E10A.17 off this based on mRNA data 010419 db
SL1 trans-spliced; see AJ297846
Associated_feature WBsf000176
WBsf000178
Methodcurated