CDS: ZK1290.3a
ZK1290.3a | SMap | S_parent | Sequence | ZK1290 | |
---|---|---|---|---|---|
Structure | Source_exons | 1 | 168 | ||
255 | 1050 | ||||
1101 | 1126 | ||||
DB_info | Database | SwissProt | SwissProt_ID | COL6_CAEEL | |
SwissProt_AC | P18831 | ||||
NDB | GI_number | 24942956 | |||
NCBI | RefSeq | NM_063181 | |||
Protein_id | ZK1290 | AAN65281 | 1 | ||
DB_remark | C. elegans ROL-8 protein; contains similarity to Pfam domains PF01484 (Nematode cuticle collagen N-terminal domain), PF01391 (Collagen triple helix repeat (20 copies))(3)contains similarity to Interpro domains IPR002486 (Nematode cuticle collagen, N-terminal), IPR008161 (Collagen helix repeat), IPR008160 (Collagen triple helix repeat) | ||||
Origin | From_laboratory | RW | |||
Species | Caenorhabditis elegans | ||||
Properties | Coding | CDS | |||
Prediction_status | Confirmed | ||||
Isoform | Accession_evidence | EMBL | BJ781452 | ||
Inferred_automatically | transcript_builder | ||||
Visible | Gene | ZK1290.3 | |||
Corresponding_transcript | ZK1290.3a | ||||
Corresponding_protein | WP:CE29156 | ||||
Corresponding_PCR_product | cenix:64-a1 | ||||
mv_AAA27991 | |||||
sjj_ZK1290.3 | |||||
smd_col-6_2 | |||||
Corresponding_RNAi_reagent | Cenix:64-a1 | ||||
sjj_ZK1290.3 | |||||
Matching_cDNA (53) | |||||
RNAi_result | Cenix:64-a1 | ||||
JA:ZK1290.3 | |||||
WB_RNAi_result | JA:ZK1290.3 | ||||
MV_SV:mv_AAA27991 | |||||
Cenix:64-a1 | |||||
GO_term | GO:0042302 | IEA | Inferred_automatically | ||
GO:0006817 | IEA | Inferred_automatically | |||
GO:0005737 | IEA | Inferred_automatically | |||
Microarray_results | SMD_ZK1290.3 | ||||
192967_at | |||||
192968_s_at | |||||
Aff_ZK1290.3 | |||||
Brief_identification | Cutical collagen 6, col-6 | ||||
Y2H_target | Y2H007030 | ||||
Remark | all discrepancies between this sequence and the genomic sequence already in genbank were checked; all of our sequence was deemed to be accurate. | ||||
changed locus designation from col-6 to rol-8 based on a note from Sylvia Martinelli-991013-js | |||||
truncated C-terminus based on EST data 010904 db | |||||
Method | curated |