Go to RNAiDB Home Adult Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie Wild-type C. elegans Movie
 

CDS: ZK1290.3a   

ZK1290.3aSMapS_parentSequenceZK1290
Structure Source_exons 1168
2551050
11011126
DB_info Database SwissProt SwissProt_ID COL6_CAEEL
SwissProt_AC P18831
NDB GI_number 24942956
NCBI RefSeq NM_063181
Protein_idZK1290 AAN652811
DB_remarkC. elegans ROL-8 protein; contains similarity to Pfam domains PF01484 (Nematode cuticle collagen N-terminal domain), PF01391 (Collagen triple helix repeat (20 copies))(3)contains similarity to Interpro domains IPR002486 (Nematode cuticle collagen, N-terminal), IPR008161 (Collagen helix repeat), IPR008160 (Collagen triple helix repeat)
Origin From_laboratoryRW
SpeciesCaenorhabditis elegans
Properties Coding CDS
Prediction_statusConfirmed
Isoform Accession_evidenceEMBL BJ781452
Inferred_automaticallytranscript_builder
Visible GeneZK1290.3
Corresponding_transcriptZK1290.3a
Corresponding_proteinWP:CE29156
Corresponding_PCR_product cenix:64-a1
mv_AAA27991
sjj_ZK1290.3
smd_col-6_2
Corresponding_RNAi_reagent Cenix:64-a1
sjj_ZK1290.3
Matching_cDNA (53)
RNAi_result Cenix:64-a1
JA:ZK1290.3
WB_RNAi_result JA:ZK1290.3
MV_SV:mv_AAA27991
Cenix:64-a1
GO_term GO:0042302 IEA Inferred_automatically
GO:0006817 IEA Inferred_automatically
GO:0005737 IEA Inferred_automatically
Microarray_results SMD_ZK1290.3
192967_at
192968_s_at
Aff_ZK1290.3
Brief_identificationCutical collagen 6, col-6
Y2H_targetY2H007030
Remark all discrepancies between this sequence and the genomic sequence already in genbank were checked; all of our sequence was deemed to be accurate.
changed locus designation from col-6 to rol-8 based on a note from Sylvia Martinelli-991013-js
truncated C-terminus based on EST data 010904 db
Methodcurated