CDS: ZK270.2b
ZK270.2b | SMap | S_parent | Sequence | SUPERLINK_CB_IR | |
---|---|---|---|---|---|
Structure | Source_exons (11) | ||||
DB_info | Database | TREMBL | Q9XV97_CAEEL | ||
TrEMBL_AC | Q9XV97 | ||||
NDB | GI_number | 31043835 | |||
NCBI | RefSeq | NM_061198 | |||
Protein_id | F11C3 | CAB04091 | 2 | ||
ZK270 | CAB05004 | 2 | |||
DB_remark | C. elegans FRM-1 protein; contains similarity to Pfam domains PF00373 (FERM domain (Band 4.1 family)), PF05902 (4.1 protein C-terminal domain (CTD))contains similarity to Interpro domains IPR000798 (Ezrin/radixin/moesin ERM), IPR011993 (Pleckstrin homology-type), IPR009065 (FERM), IPR008379 (4.1, C-terminal), IPR000299 (Band 4.1) | ||||
Origin | From_laboratory | HX | |||
Species | Caenorhabditis elegans | ||||
Properties | Coding | CDS | |||
Prediction_status | Partially_confirmed | ||||
Isoform | Accession_evidence | NDB | BJ801627 | ||
Inferred_automatically | transcript_builder | ||||
Visible | Gene | ZK270.2 | |||
Corresponding_transcript | ZK270.2b | ||||
Corresponding_protein | WP:CE34143 | ||||
Corresponding_PCR_product | cenix:77-f4 | ||||
mv_ZK270.2c | |||||
mv_ZK270.2a | |||||
Corresponding_RNAi_reagent | Cenix:77-f4 | ||||
Matching_cDNA (5) | |||||
RNAi_result | Cenix:77-f4 | ||||
WB_RNAi_result | MV_SV:mv_ZK270.2c | ||||
Cenix:77-f4 | |||||
GO_term (7) | |||||
Variation (5) | |||||
Brief_identification | Band 4.1 protein like | ||||
Remark | [030508 pad] Gene model changed to recognise the existence of an SL1 at the beginning of the gene model. Also the model was revised to accomodate the large confirmed intron of yk1162g02. To do this the small 6th exon of .2a had to again be used as well as truncating the exon 3' of the large confirmed intron. | ||||
[alt] Alternate isoform defined by EST yk1162g02 | |||||
Associated_feature | WBsf007506 | ||||
Method | curated |