| RNAi Experiment: [cgc5655]:T28C6.6 |
Ace View of [cgc5655]:T28C6.6
|
| Genes Inhibited |
 |
| Gene Inhibited |
T28C6.6 (col-3) |
| Description of "T28C6.6" |
col-3 encodes a collagen protein that affects body morphogenesis, larval viability, and locomotion in large scale RNAi screens; mRNA is expressed during all developmental stages examined (in embryos, during the L2 to dauer molt, during the dauer to L4 larval molt, and during the L4 to adult molt). |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| ePCR |
Status: Unique_ePCR (IV:8824571..8825966)
Transcript overlap: 924 nt |
|
| Sliding Window |
Raw score: 861
Relative score: 0.987 (Best raw score= for Gene )
Specificity index: 0.229 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "T28C6.6" Links |
  |
| Gene Inhibited |
T15B7.3 (col-143) |
| Description of "T15B7.3" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 360
Relative score: 0.413 (Best raw score= for Gene )
Specificity index: 0.096 |
|
| External "T15B7.3" Links |
|
| Gene Inhibited |
T28C6.4 (col-117) |
| Description of "T28C6.4" |
Associated GO Term : structural constituent of cuticle |
| Evidence for Inhibition |
| Sliding Window |
Raw score: 872
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.232 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "T28C6.4" Links |
|
| Gene Inhibited |
B0222.8 (col-10) |
| Description of "B0222.8" |
col-10 encodes a collagen protein; expressed exclusively in hypodermal cells |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 240
Specificity index: 0.064 |
|
| External "B0222.8" Links |
|
| Gene Inhibited |
W05B2.6 (col-92) |
| Description of "W05B2.6" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 124
Relative score: 0.142 (Best raw score= for Gene )
Specificity index: 0.033 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "W05B2.6" Links |
|
| Gene Inhibited |
W05B2.5 (col-93) |
| Description of "W05B2.5" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 106
Relative score: 0.122 (Best raw score= for Gene )
Specificity index: 0.028 |
|
| External "W05B2.5" Links |
|
| Gene Inhibited |
Y2H9A.3 (col-162) |
| Description of "Y2H9A.3" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 68
Relative score: 0.078 (Best raw score= for Gene )
Specificity index: 0.018 |
|
| External "Y2H9A.3" Links |
|
| Gene Inhibited |
W05B2.1 (col-94) |
| Description of "W05B2.1" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 129
Relative score: 0.148 (Best raw score= for Gene )
Specificity index: 0.034 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "W05B2.1" Links |
|
| Gene Inhibited |
B0222.6 (col-144) |
| Description of "B0222.6" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 240
Relative score: 0.275 (Best raw score= for Gene )
Specificity index: 0.064 |
|
| External "B0222.6" Links |
|
| Gene Inhibited |
F55C10.2 (col-154) |
| Description of "F55C10.2" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 62
Relative score: 0.071 (Best raw score= for Gene )
Specificity index: 0.017 |
| Wormbase (BLAST) |
RNAi secondary |
|
| External "F55C10.2" Links |
|
| Gene Inhibited |
F11G11.10 (col-17) |
| Description of "F11G11.10" |
col-17 encodes a collagen which is expressed in all developmental stages except eggs, like col-15, col-16, and col-20; collagen genes with this expression pattern may be used for synthesis of cuticles after the L1 stage (e.g., the L4 cuticle). |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 175
Relative score: 0.201 (Best raw score= for Gene )
Specificity index: 0.047 |
|
| External "F11G11.10" Links |
|
| Gene Inhibited |
C29F4.1 (col-125) |
| Description of "C29F4.1" |
Associated GO Term : structural constituent of cuticle |
| KOG Annotation |
Collagens (type IV and type XIII), and related proteins
|
|
| Evidence for Inhibition |
| Sliding Window |
Raw score: 518
Relative score: 0.594 (Best raw score= for Gene )
Specificity index: 0.138 |
| Wormbase (BLAST) |
RNAi primary |
|
| External "C29F4.1" Links |
|
| [cgc5655]:T28C6.6 Phenotypes |
|
|
| Phenotype |
Unclassified
lipid metabolism abnormal
|
| [cgc5655]:T28C6.6 Experiment Details |
Ace View |
| Laboratory |
GR |
| RNAi Reagent & Type |
sjj_T28C6.6 (PCR_reagent) |
| Reference |
Ashrafi K et al. (2003) Nature "Genome-wide RNAi analysis of Caenorhabditis elegans fat regulatory ...." |
| Delivery Method |
Bacterial_feeding |
| Date |
2003-1-10 |
| Gene Plot of T15B7.3 |
Browse using GBrowse
|
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| Gene Plot of T28C6.4 |
Browse using GBrowse
|
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| Gene Plot of B0222.8 |
Browse using GBrowse
|
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| Gene Plot of W05B2.6 |
Browse using GBrowse
|
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| Gene Plot of T28C6.6 |
Browse using GBrowse
|
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| Gene Plot of W05B2.5 |
Browse using GBrowse
|
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| Gene Plot of Y2H9A.3 |
Browse using GBrowse
|
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| Gene Plot of W05B2.1 |
Browse using GBrowse
|
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| Gene Plot of B0222.6 |
Browse using GBrowse
|
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| Gene Plot of C29F4.1 |
Browse using GBrowse
|
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| Gene Plot of F55C10.2 |
Browse using GBrowse
|
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| Gene Plot of F11G11.10 |
Browse using GBrowse
|
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