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RNAi Experiment: [cgc5655]:tph-1:ZK675.1 Ace View of [cgc5655]:tph-1:ZK675.1
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  ZK675.1 (ptc-1)
Description of "ZK675.1"  ptc-1 is orthologous to Drosophila patched and human PTC; mutation of human PTC leads to nevoid basal cell carcinoma syndrome (OMIM:109400).
KOG Annotation  Membrane protein Patched/PTCH
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (II:7898603..7899756)
Transcript overlap: 1057 nt		 Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 994
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.775
Wormbase (BLAST) RNAi primary
External "ZK675.1" Links  Wormbase NCBI
Gene Inhibited  F21H12.4 (ptc-2)
Description of "F21H12.4"  Associated GO Term : hedgehog receptor activity
KOG Annotation  Membrane protein Patched/PTCH
What's a KOG?
Evidence for Inhibition 
Sliding Window Raw score: 288
Relative score: 0.29 (Best raw score= for Gene )
Specificity index: 0.225
Wormbase (BLAST) RNAi primary
External "F21H12.4" Links  Wormbase NCBI
[cgc5655]:tph-1:ZK675.1 Phenotypes Help with Phenotypes
Phenotype  Unclassified lipid metabolism abnormal
[cgc5655]:tph-1:ZK675.1 Experiment Details Ace View
Laboratory  GR
RNAi Reagent & Type  sjj_ZK675.1 (PCR_reagent)
Strain  tph-1(mg280)
Reference  Ashrafi K et al. (2003) Nature "Genome-wide RNAi analysis of Caenorhabditis elegans fat regulatory ...."
Delivery Method  Bacterial_feeding
Date  2003-1-10
Gene Plot of ZK675.1 Browse using GBrowse
Gene Graph
Gene Plot of F21H12.4 Browse using GBrowse
Gene Graph