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RNAi Experiment: Cenix:118-b9 Ace View of Cenix:118-b9
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  C35B1.1 (ubc-1)
Description of "C35B1.1"  ubc-1 encodes an E2 ubiquitin-conjugating enzyme that contains a novel 40 amino acid C-terminal tail, and is homologous to Saccharomyces cerevisiae RAD6/UBC2 which is involved in DNA repair; although loss of UBC-1 activity via RNA-mediated interference (RNAi) does not result in any abnormalities, UBC-1 is able to complement the DNA repair defects of a Saccharomyces cerevisiae rad6 null mutant, suggesting that UBC-1 can function in the DNA repair pathway; ubc-1 mRNA is detectable in embryos.
KOG Annotation  Ubiquitin-protein ligase
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (IV:4104071..4105225)
Transcript overlap: 500 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 458
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 1 (RNAi reagent is specific for this gene)
Wormbase (BLAST) RNAi primary
External "C35B1.1" Links  Wormbase NCBI Phenobank 1
Cenix:118-b9 Phenotypes Help with Phenotypes
Phenotype  WT
Cenix:118-b9 Experiment Details Ace View
Laboratory  TH
RNAi Reagent & Type  Cenix:118-b9 (PCR_reagent)
Remark  3/3 tests are wt,
Reference  Sonnichsen B et al. (2005) Nature "Full-genome RNAi profiling of early embryogenesis in Caenorhabditis ...."
Delivery Method  Injection
Date  2005-3-24
Gene Plot of C35B1.1 Browse using GBrowse
Gene Graph