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RNAi Experiment: Cenix:122-h5 Ace View of Cenix:122-h5
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  F40F9.2 (tag-120)
Description of "F40F9.2"  tag-120 encodes a predicted transmembrane protein; as loss of tag-120 activity via RNAi does not result in any abnormalities, the precise role of TAG-120 in C. elegans development and/or behavior is not yet known; however, TAG-120 is homologous to a Drosophila NMDA receptor-associated protein and mammalian transmembrane proteins that function in Fas-mediated cell death, so TAG-120 may play a role in neuronal functions and/or apoptosis; a tag-120 reporter fusion is expressed in the nervous system, pharyngeal muscles, and to a lesser extent in the excretory system.
KOG Annotation  N-methyl-D-aspartate receptor glutamate-binding subunit
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (V:9710320..9710861)
Transcript overlap: 542 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 521
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 1 (RNAi reagent is specific for this gene)
Wormbase (BLAST) RNAi primary
External "F40F9.2" Links  Wormbase NCBI Phenobank 1
Gene Inhibited  F40F9.1 (xbx-6)
KOG Annotation  N-methyl-D-aspartate receptor glutamate-binding subunit
What's a KOG?
Evidence for Inhibition 
ePCR Transcript overlap: 59 nt Explain types of evidence for RNAi inhibition
External "F40F9.1" Links  Wormbase NCBI Phenobank 1
Cenix:122-h5 Phenotypes Help with Phenotypes
Phenotype  WT
Cenix:122-h5 Experiment Details Ace View
Laboratory  TH
RNAi Reagent & Type  Cenix:122-h5 (PCR_reagent)
Remark  Wildtype results in all three tests.
Reference  Sonnichsen B et al. (2005) Nature "Full-genome RNAi profiling of early embryogenesis in Caenorhabditis ...."
Delivery Method  Injection
Date  2005-3-24
Gene Plot of F40F9.2 Browse using GBrowse
Gene Graph
Gene Plot of F40F9.1 Browse using GBrowse
Gene Graph