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RNAi Experiment: Cenix:122-h9 Ace View of Cenix:122-h9
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  R11G10.1 (avr-15)
Description of "R11G10.1"  avr-15 encodes, via alternative splicing, two glutamate-gated chloride channel subunit homologs; these proteins mediate fast inhibitory glutamatergic neuromuscular transmission, as well as ivermectin sensitivity, and are required for normal pharyngeal function.
KOG Annotation  Ligand-gated ion channel
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (V:13511324..13512230)
Transcript overlap: 410 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 369
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 1 (RNAi reagent is specific for this gene)
External "R11G10.1" Links  Wormbase NCBI Phenobank 1
Cenix:122-h9 Phenotypes Help with Phenotypes
Phenotype  WT
Cenix:122-h9 Experiment Details Ace View
Laboratory  TH
RNAi Reagent & Type  Cenix:122-h9 (PCR_reagent)
Remark  Wildtype results in all three tests.
Reference  Sonnichsen B et al. (2005) Nature "Full-genome RNAi profiling of early embryogenesis in Caenorhabditis ...."
Delivery Method  Injection
Date  2005-3-24
Gene Plot of R11G10.1 Browse using GBrowse
Gene Graph