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RNAi Experiment: Cenix:125-h9 Ace View of Cenix:125-h9
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  C54G4.6 (dod-18)
Description of "C54G4.6"  This gene encodes a protein predicted by Eisenberg and coworkers, with 68% accuracy, to be mitochondrial.
KOG Annotation  Predicted nucleic acid-binding protein ASMTL
What's a KOG?
Evidence for Inhibition 
ePCR Status: Best_ePCR (I:8019731..8020505)
Transcript overlap: 350 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 217
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.702
Wormbase (BLAST) RNAi primary
External "C54G4.6" Links  Wormbase NCBI Phenobank 1
Gene Inhibited  C54G4.7
KOG Annotation  Uncharacterized conserved protein
What's a KOG?
Evidence for Inhibition 
ePCR Status: Bottom50_percentile_ePCR (I:8019731..8020505)
Transcript overlap: 115 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 92
Relative score: 0.424 (Best raw score= for Gene )
Specificity index: 0.298
External "C54G4.7" Links  Wormbase NCBI Phenobank 1
Cenix:125-h9 Phenotypes Help with Phenotypes
Phenotype  WT
Cenix:125-h9 Experiment Details Ace View
Laboratory  TH
RNAi Reagent & Type  Cenix:125-h9 (PCR_reagent)
Remark  3/3 tests are wildtype.
Reference  Sonnichsen B et al. (2005) Nature "Full-genome RNAi profiling of early embryogenesis in Caenorhabditis ...."
Delivery Method  Injection
Date  2005-3-24
Gene Plot of C54G4.6 Browse using GBrowse
Gene Graph
Gene Plot of C54G4.7 Browse using GBrowse
Gene Graph