RNAi Experiment: Cenix:13-d1 |
Ace View of Cenix:13-d1
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Genes Inhibited |
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Gene Inhibited |
F58A6.9 |
Description of "F58A6.9" |
Associated GO Term : structural molecule activity |
Evidence for Inhibition |
ePCR |
Status: Unique_ePCR (II:5158590..5158907)
Transcript overlap: 318 nt |
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Sliding Window |
Raw score: 276
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.159 |
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External "F58A6.9" Links |
1 |
Gene Inhibited |
Y59E9AR.7 |
Description of "Y59E9AR.7" |
Associated GO Term : structural molecule activity |
Evidence for Inhibition |
Sliding Window |
Raw score: 62
Specificity index: 0.036 |
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External "Y59E9AR.7" Links |
1 |
Gene Inhibited |
R05F9.3 (msp-32) |
Description of "R05F9.3" |
msp-32 encodes a protein that belongs to a family of proteins called the Major Sperm Proteins (MSPs) that is conserved in nematodes; msp-32 has a C. briggsae homolog as predicted by the Wobble Aware Bulk Aligner (WABA); the msp family consists of closely related, small, basic proteins that make up 15% of sperm protein; this multigene family consists of over fifty genes, including many pseudogenes; MSPs are involved in both extracellular signaling and cytoskeletal functions during reproduction-MSP antagonizes Eph/ephrin signaling, in part, by binding VAB-1 Eph receptor tyrosine kinase on oocytes and sheath cells to promote oocyte maturation and MAPK activation; MSPs assemble into fibrous networks that drive movement of the C. elegans sperm; msp genes are expressed only in late primary spermatocytes. |
Evidence for Inhibition |
Sliding Window |
Raw score: 105
Relative score: 0.38 (Best raw score= for Gene )
Specificity index: 0.06 |
Wormbase (BLAST) |
RNAi secondary |
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External "R05F9.3" Links |
1 |
Gene Inhibited |
F36H12.7 (msp-19) |
Description of "F36H12.7" |
msp-19 encodes a protein that belongs to a family of proteins called the Major Sperm Proteins (MSPs) that is conserved in nematodes; msp-19 has a homolog in C. briggsae as predicted by the Wobble Aware Bulk Aligner (WABA); the msp gene family consists of closely related, small, basic proteins that make up 15% of sperm protein; this multigene family consists of over fifty genes, including many pseudogenes; MSPs are involved in both extracellular signaling and cytoskeletal functions during reproduction-MSP antagonizes Eph/ephrin signaling, in part, by binding VAB-1 Eph receptor tyrosine kinase on oocytes and sheath cells to promote oocyte maturation and MAPK activation; MSPs assemble into fibrous networks that drive movement of the C. elegans sperm; msp genes are expressed only in late primary spermatocytes. |
Evidence for Inhibition |
Sliding Window |
Raw score: 59 |
Wormbase (BLAST) |
RNAi secondary |
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External "F36H12.7" Links |
1 |
Gene Inhibited |
Y59E9AR.1 |
Description of "Y59E9AR.1" |
Associated GO Term : structural molecule activity |
Evidence for Inhibition |
Sliding Window |
Raw score: 62
Specificity index: 0.036 |
Wormbase (BLAST) |
RNAi secondary |
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External "Y59E9AR.1" Links |
1 |
Gene Inhibited |
K08F4.8 (msp-38) |
Description of "K08F4.8" |
msp-38 encodes a member of the major sperm protein family; msp-38 has a C. briggsae homolog as predicted by the Wobble Bulk Aware Bulk Aligner (WABA). |
Evidence for Inhibition |
Sliding Window |
Raw score: 73
Specificity index: 0.042 |
Wormbase (BLAST) |
RNAi secondary |
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External "K08F4.8" Links |
1 |
Gene Inhibited |
ZK546.3 |
Description of "ZK546.3" |
Associated GO Term : structural molecule activity |
Evidence for Inhibition |
Sliding Window |
Raw score: 71
Relative score: 0.257 (Best raw score= for Gene )
Specificity index: 0.041 |
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External "ZK546.3" Links |
1 |
Gene Inhibited |
ZK354.5 (msp-51) |
Description of "ZK354.5" |
msp-51 encodes a protein that belongs to a family of proteins called the Major Sperm Proteins (MSPs) that is conserved in nematodes; msp-51 has a C. briggsae homolog as predicted by the Wobble Aware Bulk Aligner (WABA); the MSP family consists of closely related, small, basic proteins that make up 15% of sperm protein; this multigene family consists of over fifty genes, including many pseudogenes; MSPs are involved in both extracellular signaling and cytoskeletal functions during reproduction-MSP antagonizes Eph/ephrin signaling, in part, by binding VAB-1 Eph receptor tyrosine kinase on oocytes and sheath cells to promote oocyte maturation and MAPK activation; MSPs assemble into fibrous networks that drive movement of the C. elegans sperm; msp genes are expressed only in late primary spermatocytes. |
Evidence for Inhibition |
Sliding Window |
Raw score: 62
Specificity index: 0.036 |
Wormbase (BLAST) |
RNAi secondary |
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External "ZK354.5" Links |
1 |
Gene Inhibited |
ZK354.10 (msp-58) |
Description of "ZK354.10" |
msp-58 encodes a protein that belongs to a family of proteins called the Major Sperm Proteins (MSPs) that is conserved in nematodes; this family consists of closely related, small, basic proteins that make up 15% of sperm protein; this multigene family consists of over fifty genes, including many pseudogenes; MSPs are involved in both extracellular signaling and cytoskeletal functions during reproduction-MSP antagonizes Eph/ephrin signaling, in part, by binding VAB-1 Eph receptor tyrosine kinase on oocytes and sheath cells to promote oocyte maturation and MAPK activation; MSPs assemble into fibrous networks that drive movement of the C. elegans sperm; msp genes are expressed only in late primary spermatocytes. |
Evidence for Inhibition |
Sliding Window |
Raw score: 83
Specificity index: 0.048 |
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External "ZK354.10" Links |
1 |
Gene Inhibited |
T13F2.10 (msp-79) |
Description of "T13F2.10" |
msp-79 encodes a member of the major sperm protein family. |
Evidence for Inhibition |
Sliding Window |
Raw score: 62
Specificity index: 0.036 |
Wormbase (BLAST) |
RNAi secondary |
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External "T13F2.10" Links |
1 |
Gene Inhibited |
F32B6.6 (msp-77) |
Description of "F32B6.6" |
msp-77 encodes a protein that belongs to a family of proteins called the Major Sperm Proteins (MSPs) that is conserved in nematodes; this family consists of closely related, small, basic proteins that make up 15% of sperm protein; this multigene family consists of over fifty genes, including many pseudogenes; MSPs are involved in both extracellular signaling and cytoskeletal functions during reproduction-MSP antagonizes Eph/ephrin signaling, in part, by binding VAB-1 Eph receptor tyrosine kinase on oocytes and sheath cells to promote oocyte maturation and MAPK activation; MSPs assemble into fibrous networks that drive movement of the C. elegans sperm; msp genes are expressed only in late primary spermatocytes. |
Evidence for Inhibition |
Sliding Window |
Raw score: 62
Specificity index: 0.036 |
Wormbase (BLAST) |
RNAi secondary |
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External "F32B6.6" Links |
1 |
Gene Inhibited |
F58A6.8 (msp-45) |
Description of "F58A6.8" |
msp-45 encodes a member of the major sperm protein family. |
Evidence for Inhibition |
Sliding Window |
Raw score: 135
Relative score: 0.489 (Best raw score= for Gene )
Specificity index: 0.078 |
Wormbase (BLAST) |
RNAi primary |
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External "F58A6.8" Links |
1 |
Gene Inhibited |
R13H9.4 (msp-53) |
Description of "R13H9.4" |
msp-53 encodes a protein that belongs to a family of proteins called the Major Sperm Proteins (MSPs) that is conserved in nematodes; msp-53 has a C. briggsae homolog as identified by the Wobble Aware Bulk Aligner (WABA); the MSP family consists of closely related, small, basic proteins that make up 15% of sperm protein; this multigene family consists of over fifty genes, including many pseudogenes; MSPs are involved in both extracellular signaling and cytoskeletal functions during reproduction-MSP antagonizes Eph/ephrin signaling, in part, by binding VAB-1 Eph receptor tyrosine kinase on oocytes and sheath cells to promote oocyte maturation and MAPK activation; MSPs assemble into fibrous networks that drive movement of the C. elegans sperm; msp genes are expressed only in late primary spermatocytes. |
Evidence for Inhibition |
Sliding Window |
Raw score: 62
Specificity index: 0.036 |
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External "R13H9.4" Links |
1 |
Gene Inhibited |
ZK354.4 (msp-113) |
Description of "ZK354.4" |
msp-113 encodes a protein that belongs to a family of proteins called the Major Sperm Proteins (MSPs) that is conserved in nematodes; msp-113 has a C. briggsae homolog as detected by the Wobble Aware Bulk Aligner (WABA); the MSP family consists of closely related, small, basic proteins that make up 15% of sperm protein; this multigene family consists of over fifty genes, including many pseudogenes; the msp-113 promoter region contains two conserved cis elements that are recognition sites for elt-1, a gene that encodes a homolog of the vertebrate GATA transcription factor family; this suggests that a MSP protein is a potential target for ELT-1 in the germ-line; MSPs are involved in both extracellular signaling and cytoskeletal functions during reproduction-MSP antagonizes Eph/ephrin signaling, in part, by binding VAB-1 Eph receptor tyrosine kinase on oocytes and sheath cells to promote oocyte maturation and MAPK activation; MSPs assemble into fibrous networks that drive movement of the C. elegans sperm; msp genes are expressed only in late primary spermatocytes. |
Evidence for Inhibition |
Sliding Window |
Raw score: 83
Specificity index: 0.048 |
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External "ZK354.4" Links |
1 |
Gene Inhibited |
R05F9.8 (msp-33) |
Description of "R05F9.8" |
msp-33 encodes a protein that belongs to a family of proteins called the Major Sperm Proteins (MSPs) that is conserved in nematodes; msp-33 has a C. briggsae homolog as predicted by the Wobble Aware Bulk Aligner (WABA); the MSP family consists of closely related, small, basic proteins that make up 15% of sperm protein; this multigene family consists of over fifty genes, including many pseudogenes; MSPs are involved in both extracellular signaling and cytoskeletal functions during reproduction-MSP antagonizes Eph/ephrin signaling, in part, by binding VAB-1 Eph receptor tyrosine kinase on oocytes and sheath cells to promote oocyte maturation and MAPK activation; MSPs assemble into fibrous networks that drive movement of the C. elegans sperm; msp genes are expressed only in late primary spermatocytes. |
Evidence for Inhibition |
Sliding Window |
Raw score: 79
Relative score: 0.286 (Best raw score= for Gene )
Specificity index: 0.045 |
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External "R05F9.8" Links |
1 |
Gene Inhibited |
ZK354.11 (msp-59) |
Description of "ZK354.11" |
msp-59 encodes a member of the major sperm protein family. |
Evidence for Inhibition |
Sliding Window |
Raw score: 62
Relative score: 0.225 (Best raw score= for Gene )
Specificity index: 0.036 |
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External "ZK354.11" Links |
1 |
Gene Inhibited |
C34F11.6 (msp-49) |
Description of "C34F11.6" |
msp-49 encodes a protein that belongs to a family of proteins called the Major Sperm Proteins (MSPs) that is conserved in nematodes; this family consists of closely related, small, basic proteins that make up 15% of sperm protein; this multigene family consists of over fifty genes, including many pseudogenes; MSPs are involved in both extracellular signaling and cytoskeletal functions during reproduction-MSP antagonizes Eph/ephrin signaling, in part, by binding VAB-1 Eph receptor tyrosine kinase on oocytes and sheath cells to promote oocyte maturation and MAPK activation; MSPs assemble into fibrous networks that drive movement of the C. elegans sperm; msp genes are expressed only in late primary spermatocytes. |
Evidence for Inhibition |
Sliding Window |
Raw score: 73
Relative score: 0.264 (Best raw score= for Gene )
Specificity index: 0.042 |
Wormbase (BLAST) |
RNAi secondary |
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External "C34F11.6" Links |
1 |
Gene Inhibited |
ZK354.1 (msp-65) |
Description of "ZK354.1" |
msp-65 encodes a protein that belongs to a family of proteins called the Major Sperm Proteins (MSPs) that is conserved in nematodes; this family consists of closely related, small, basic proteins that make up 15% of sperm protein; this multigene family consists of over fifty genes, including many pseudogenes; MSPs are involved in both extracellular signaling and cytoskeletal functions during reproduction-MSP antagonizes Eph/ephrin signaling, in part, by binding VAB-1 Eph receptor tyrosine kinase on oocytes and sheath cells to promote oocyte maturation and MAPK activation; MSPs assemble into fibrous networks that drive movement of the C. elegans sperm; msp genes are expressed only in late primary spermatocytes. |
Evidence for Inhibition |
Sliding Window |
Raw score: 83
Relative score: 0.301 (Best raw score= for Gene )
Specificity index: 0.048 |
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External "ZK354.1" Links |
1 |
Gene Inhibited |
ZK546.6 (msp-152) |
Description of "ZK546.6" |
msp-152 encodes a protein that belongs to a family of proteins called the Major Sperm Proteins (MSPs) that is conserved in nematodes; this family consists of closely related, small, basic proteins that make up 15% of sperm protein; this multigene family consists of over fifty genes, including many pseudogenes; MSPs are involved in both extracellular signaling and cytoskeletal functions during reproduction-MSP antagonizes Eph/ephrin signaling, in part, by binding VAB-1 Eph receptor tyrosine kinase on oocytes and sheath cells to promote oocyte maturation and MAPK activation; MSPs assemble into fibrous networks that drive movement of the C. elegans sperm; msp genes are expressed only in late primary spermatocytes. |
Evidence for Inhibition |
Sliding Window |
Raw score: 93
Relative score: 0.337 (Best raw score= for Gene )
Specificity index: 0.053 |
Wormbase (BLAST) |
RNAi secondary |
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External "ZK546.6" Links |
1 |
Gene Inhibited |
F36H12.6 (msp-52) |
Description of "F36H12.6" |
msp-52 encodes a protein that belongs to a family of proteins called the Major Sperm Proteins (MSPs) that is conserved in nematodes; this family consists of closely related, small, basic proteins that make up 15% of sperm protein; this multigene family consists of over fifty genes, including many pseudogenes; MSPs are involved in both extracellular signaling and cytoskeletal functions during reproduction-MSP antagonizes Eph/ephrin signaling, in part, by binding VAB-1 Eph receptor tyrosine kinase on oocytes and sheath cells to promote oocyte maturation and MAPK activation; MSPs assemble into fibrous networks that drive movement of the C. elegans sperm; msp genes are expressed only in late primary spermatocytes. |
Evidence for Inhibition |
Sliding Window |
Raw score: 75
Relative score: 0.272 (Best raw score= for Gene )
Specificity index: 0.043 |
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External "F36H12.6" Links |
1 |
Gene Inhibited |
F59A6.8 (msp-71) |
Description of "F59A6.8" |
msp-71 encodes a protein that belongs to a family of proteins called the Major Sperm Proteins (MSPs) that is conserved in nematodes; this family consists of closely related, small, basic proteins that make up 15% of sperm protein; this multigene family consists of over fifty genes, including many pseudogenes; MSPs are involved in both extracellular signaling and cytoskeletal functions during reproduction-MSP antagonizes Eph/ephrin signaling, in part, by binding VAB-1 Eph receptor tyrosine kinase on oocytes and sheath cells to promote oocyte maturation and MAPK activation; MSPs assemble into fibrous networks that drive movement of the C. elegans sperm; msp genes are expressed only in late primary spermatocytes. |
Evidence for Inhibition |
Sliding Window |
Raw score: 76
Relative score: 0.275 (Best raw score= for Gene )
Specificity index: 0.044 |
Wormbase (BLAST) |
RNAi secondary |
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External "F59A6.8" Links |
1 |
Cenix:13-d1 Phenotypes |
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Phenotype |
WT
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External Movies (Please note that RNAiDB is not hosting these data.) |
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Cenix:13-d1 Experiment Details |
Ace View |
Laboratory |
TH |
RNAi Reagent & Type |
Cenix:13-d1 (PCR_reagent) |
Reference |
Sonnichsen B et al. (2005) Nature "Full-genome RNAi profiling of early embryogenesis in Caenorhabditis ...." |
Delivery Method |
Injection |
Date |
2005-3-24 |
Gene Plot of Y59E9AR.7 |
Browse using GBrowse
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Gene Plot of R05F9.3 |
Browse using GBrowse
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Gene Plot of F36H12.7 |
Browse using GBrowse
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Gene Plot of Y59E9AR.1 |
Browse using GBrowse
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Gene Plot of K08F4.8 |
Browse using GBrowse
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Gene Plot of ZK546.3 |
Browse using GBrowse
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Gene Plot of F58A6.8 |
Browse using GBrowse
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Gene Plot of F32B6.6 |
Browse using GBrowse
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Gene Plot of T13F2.10 |
Browse using GBrowse
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Gene Plot of ZK354.5 |
Browse using GBrowse
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Gene Plot of ZK354.10 |
Browse using GBrowse
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Gene Plot of R05F9.8 |
Browse using GBrowse
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Gene Plot of ZK354.4 |
Browse using GBrowse
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Gene Plot of R13H9.4 |
Browse using GBrowse
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Gene Plot of C34F11.6 |
Browse using GBrowse
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Gene Plot of ZK354.11 |
Browse using GBrowse
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Gene Plot of ZK546.6 |
Browse using GBrowse
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Gene Plot of ZK354.1 |
Browse using GBrowse
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Gene Plot of F58A6.9 |
Browse using GBrowse
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Gene Plot of F36H12.6 |
Browse using GBrowse
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Gene Plot of F59A6.8 |
Browse using GBrowse
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