Link to F59A6.1Link to F33G12.2Link to F33G12.3RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to F59A6.1RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap Link to F16H11.2RNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentgeneMap
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RNAi Experiment: Cenix:14-h7 Ace View of Cenix:14-h7
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  F33G12.2
KOG Annotation  Conserved WD40 repeat-containing protein
What's a KOG?
Evidence for Inhibition 
ePCR Status: Best_ePCR (II:5029519..5030740)
Transcript overlap: 607 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 523
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.509
Wormbase (BLAST) RNAi primary
External "F33G12.2" Links  Wormbase NCBI Phenobank 1 2
Gene Inhibited  F59A6.1 (nsy-1)
Description of "F59A6.1"  nsy-1 encodes a MAP kinase kinase kinase homolog that affects chemotaxis, egg laying, and pathogen response; NSY-1 activity is activated by the calmodulin kinase UNC-43, and is required for lateral signalling that leads to asymmetric olfactory neuron fates; interacts with SEK-1, and is expressed in the intestine, hypodermis, rectal gland cells, and neurons.
KOG Annotation  Serine/threonine protein kinase
What's a KOG?
Evidence for Inhibition 
ePCR Status: Top50_percentile_ePCR (II:5029519..5030740)
Transcript overlap: 449 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 407
Relative score: 0.778 (Best raw score= for Gene )
Specificity index: 0.396
Wormbase (BLAST) RNAi primary
External "F59A6.1" Links  Wormbase NCBI Phenobank 1 2
Gene Inhibited  F16H11.2
Evidence for Inhibition 
Sliding Window Raw score: 98
Relative score: 0.187 (Best raw score= for Gene )
Specificity index: 0.095
External "F16H11.2" Links  Wormbase NCBI Phenobank 1 2
Cenix:14-h7 Phenotypes Help with Phenotypes
Phenotype  WT
External Movies 
(Please note that RNAiDB is not
hosting these data.)
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Cenix:14-h7 Experiment Details Ace View
Laboratory  TH
RNAi Reagent & Type  Cenix:14-h7 (PCR_reagent)
Remark  early embryonic: Clear cut result.
Reference  Sonnichsen B et al. (2005) Nature "Full-genome RNAi profiling of early embryogenesis in Caenorhabditis ...."
Delivery Method  Injection
Date  2005-3-24
Gene Plot of F16H11.2 Browse using GBrowse
Gene Graph
Gene Plot of F59A6.1 Browse using GBrowse
Gene Graph
Gene Plot of F33G12.2 Browse using GBrowse
Gene Graph