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RNAi Experiment: Cenix:140-a7 Ace View of Cenix:140-a7
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  M01F1.3
Description of "M01F1.3"  This gene encodes a protein predicted by Eisenberg and coworkers, with 68% accuracy, to be mitochondrial.
KOG Annotation  Lipoate synthase
What's a KOG?
Evidence for Inhibition 
ePCR Status: Best_ePCR (III:3502904..3503725)
Transcript overlap: 723 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 660
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.556
External "M01F1.3" Links  Wormbase NCBI Phenobank 1
Gene Inhibited  M01F1.2 (rpl-16)
Description of "M01F1.2"  rpl-16 encodes a large ribosomal subunit L13a protein.
KOG Annotation  60S ribosomal protein L13a
What's a KOG?
Evidence for Inhibition 
ePCR Status: Top50_percentile_ePCR (III:3502904..3503725)
Transcript overlap: 591 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 528
Relative score: 0.8 (Best raw score= for Gene )
Specificity index: 0.444
Wormbase (BLAST) RNAi primary
External "M01F1.2" Links  Wormbase NCBI Phenobank 1
Cenix:140-a7 Phenotypes Help with Phenotypes
Embryonic  Emb Penetrance None reported
Phenotype  Severe Pleiotropic Defects
External Movies 
(Please note that RNAiDB is not
hosting these data.)
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Cenix:140-a7 Experiment Details Ace View
Laboratory  TH
RNAi Reagent & Type  Cenix:140-a7 (PCR_reagent)
Remark  early embryonic: Severe Pleiotropic Defects
Reference  Sonnichsen B et al. (2005) Nature "Full-genome RNAi profiling of early embryogenesis in Caenorhabditis ...."
Delivery Method  Injection
Date  2005-3-24
Gene Plot of M01F1.3 Browse using GBrowse
Gene Graph
Gene Plot of M01F1.2 Browse using GBrowse
Gene Graph