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RNAi Experiment: Cenix:144-d5 Ace View of Cenix:144-d5
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  Y48G8AL.8 (rpl-17)
Description of "Y48G8AL.8"  rpl-17 encodes a large ribosomal subunit L17 protein; by homology, RPL-17 is predicted to function in protein biosynthesis; in C. elegans, RPL-17 activity is required for embryonic and germline development, as well as normal postembryonic growth rates.
Evidence for Inhibition 
ePCR Status: Best_ePCR (I:1156628..1157677)
Transcript overlap: 573 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 510
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.827
Wormbase (BLAST) RNAi primary
External "Y48G8AL.8" Links  Wormbase NCBI Phenobank 1 2
Gene Inhibited  Y48G8AL.7
Evidence for Inhibition 
ePCR Status: Bottom50_percentile_ePCR (I:1156628..1157677)
Transcript overlap: 107 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 107
Relative score: 0.21 (Best raw score= for Gene )
Specificity index: 0.173
External "Y48G8AL.7" Links  Wormbase NCBI Phenobank 1 2
Cenix:144-d5 Phenotypes Help with Phenotypes
Embryonic  Emb Penetrance None reported
Phenotype  Severe Pleiotropic Defects
External Movies 
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Cenix:144-d5 Experiment Details Ace View
Laboratory  TH
RNAi Reagent & Type  Cenix:144-d5 (PCR_reagent)
Remark  early embryonic: Severe Pleiotropic Defects
Reference  Sonnichsen B et al. (2005) Nature "Full-genome RNAi profiling of early embryogenesis in Caenorhabditis ...."
Delivery Method  Injection
Date  2005-3-24
Gene Plot of Y48G8AL.7 Browse using GBrowse
Gene Graph
Gene Plot of Y48G8AL.8 Browse using GBrowse
Gene Graph