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RNAi Experiment: Cenix:145-b6 Ace View of Cenix:145-b6
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  Y108G3AL.1 (cul-3)
Description of "Y108G3AL.1"  cul-3 encodes one of six C. elegans cullins; by homology, CUL-3 is predicted to interact with a RING-finger protein to form the catalytic core of an SCF-type E3-ubiquitin ligase complex required for the ubiquitination and degradation of target proteins; in the early embryo, maternal CUL-3 is essential for degradation of MEI-1, a meiosis-specific subunit of the microtubule-severing katanin complex that is active during meiosis but whose degradation is essential for successful mitotic spindle formation and subsequent zygotic cytokinesis; to effect MEI-1 degradation, CUL-3 interacts with MEL-26, a substrate-specific adaptor protein that also binds MEI-1, thus linking MEI-1 with the CUL-3-containing E3 ligase; CUL-3 activity is regulated by cycles of neddylation and deneddylation that are dependent upon activity of the DCN-1, RBX-1, and RFL-1 gene products; cul-3 mRNA is present at all life stages, with highest levels seen in embryos; expression of a cul-3::GFP transcriptional reporter fusion is detected in many somatic tissues, including the pharynx, intestine, hypodermis, and several different muscle types.
KOG Annotation  Cullins
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (V:178143..179178)
Transcript overlap: 880 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 859
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 1 (RNAi reagent is specific for this gene)
Wormbase (BLAST) RNAi primary
External "Y108G3AL.1" Links  Wormbase NCBI Phenobank 1
Cenix:145-b6 Phenotypes Help with Phenotypes
Embryonic  Emb Penetrance None reported
Phenotype  Pnm
External Movies 
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Cenix:145-b6 Experiment Details Ace View
Laboratory  TH
RNAi Reagent & Type  Cenix:145-b6 (PCR_reagent)
Remark  early embryonic: Pronuclear Migration
Reference  Sonnichsen B et al. (2005) Nature "Full-genome RNAi profiling of early embryogenesis in Caenorhabditis ...."
Delivery Method  Injection
Date  2005-3-24
Gene Plot of Y108G3AL.1 Browse using GBrowse
Gene Graph