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RNAi Experiment: Cenix:165-f3 Ace View of Cenix:165-f3
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  C09G5.6 (bli-1)
Description of "C09G5.6"  The bli-1 gene encodes an unusual cuticular collagen that is required for proper strut formation within the unique medial layer of the adult cuticle; bli-1 interacts genetically with other cuticular collagens such as bli-2 and rol-1, and may be processed for secretion by BLI-4, a Kex2/subtilisin serine endoproteinase; consistent with its role in adult cuticle formation, bli-1 mRNA is highly expressed only during the L4 larval stage.
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (II:10708569..10709552)
Transcript overlap: 589 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 526
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 1 (RNAi reagent is specific for this gene)
Wormbase (BLAST) RNAi primary
External "C09G5.6" Links  Wormbase NCBI Phenobank 1
Cenix:165-f3 Phenotypes Help with Phenotypes
Phenotype  WT
Cenix:165-f3 Experiment Details Ace View
Laboratory  TH
RNAi Reagent & Type  Cenix:165-f3 (PCR_reagent)
Remark  Wildtype results in all three tests.
Reference  Sonnichsen B et al. (2005) Nature "Full-genome RNAi profiling of early embryogenesis in Caenorhabditis ...."
Delivery Method  Injection
Date  2005-3-24
Gene Plot of C09G5.6 Browse using GBrowse
Gene Graph