Link to Y38C1AB.4Link to Y38C1AB.5RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to Y38C1AB.8Link to Y38C1AB.1geneMap Link to Y38C1AB.8Link to Y38C1AB.1RNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAiRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentRNAi ReagentLink to Y38C1AB.4Link to Y38C1AB.5geneMap
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RNAi Experiment: Cenix:168-d6 Ace View of Cenix:168-d6
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  Y38C1AB.4
Description of "Y38C1AB.4"  Associated GO Term : cytoskeleton
KOG Annotation  Membrane-associated protein tyrosine phosphatase PTP-BAS and related proteins, contain FERM domain
What's a KOG?
Evidence for Inhibition 
ePCR Status: Best_ePCR (IV:7967..8716)
Transcript overlap: 361 nt		 Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 298
Relative score: 0.876 (Best raw score= for Gene )
Specificity index: 0.467
External "Y38C1AB.4" Links  Wormbase NCBI Phenobank 1 2
Gene Inhibited  Y38C1AB.8 (frm-5)
Description of "Y38C1AB.8"  frm-5 encodes a protein that contains a FERM (Band 4.1-ezrin-radixin-moesin) domain near the center of the molecule and two C-terminal PDZ domains; by homology, FRM-5 is predicted to function as a membrane-cytoskeleton linker protein that plays a role in cell adhesion, migration, or organization of cell surface structures; however, as loss of frm-5 activity via large-scale RNAi screens does not result in any obvious abnormalities, the precise role of FRM-5 in C. elegans development and/or behavior is not yet known; the FRM-5 FERM and PDZ domains are most similar to those found in cytoplasmic protein tyrosine phosphatases, even though FRM-5 does not appear to be a phosphatase.
KOG Annotation  Membrane-associated protein tyrosine phosphatase PTP-BAS and related proteins, contain FERM domain
What's a KOG?
Evidence for Inhibition 
ePCR Status: Best_ePCR (IV:39163..39912)
Transcript overlap: 361 nt		 Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 340
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 0.533
Wormbase (BLAST) RNAi primary
External "Y38C1AB.8" Links  Wormbase NCBI Phenobank 1 2
Cenix:168-d6 Phenotypes Help with Phenotypes
Phenotype  WT
Cenix:168-d6 Experiment Details Ace View
Laboratory  TH
RNAi Reagent & Type  Cenix:168-d6 (PCR_reagent)
Remark  Wildtype results in all three tests.
Reference  Sonnichsen B et al. (2005) Nature "Full-genome RNAi profiling of early embryogenesis in Caenorhabditis ...."
Delivery Method  Injection
Date  2005-3-24
Gene Plot of Y38C1AB.8 Browse using GBrowse
Gene Graph
Gene Plot of Y38C1AB.4 Browse using GBrowse
Gene Graph