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RNAi Experiment: Cenix:175-e12 Ace View of Cenix:175-e12
Genes Inhibited How is RNAi inhibition determined?
Gene Inhibited  K12D12.3 (col-84)
Description of "K12D12.3"  Associated GO Term : structural constituent of cuticle
KOG Annotation  Collagens (type IV and type XIII), and related proteins
What's a KOG?
Evidence for Inhibition 
ePCR Status: Unique_ePCR (II:11868115..11868861)
Transcript overlap: 362 nt
Explain types of evidence for RNAi inhibition
Sliding Window Raw score: 320
Relative score: 1 (This gene has the best score for this RNAi reagent)
Specificity index: 1 (RNAi reagent is specific for this gene)
Wormbase (BLAST) RNAi primary
External "K12D12.3" Links  Wormbase NCBI Phenobank 1 2
Gene Inhibited  K12D12.2 (npp-3)
Description of "K12D12.2"  npp-3 encodes a predicted nucleoporin that is a homolog of vertebrate Nup205, and is required for normal nuclear pore complex distribution in the nuclear envelope, affects nuclear exclusion of large non-nuclear macromolecules, chromatin condensation, early embryonic viability, body integrity and locomotion.
KOG Annotation  Uncharacterized conserved protein
What's a KOG?
Evidence for Inhibition 
ePCR Transcript overlap: 23 nt Explain types of evidence for RNAi inhibition
Wormbase (BLAST) RNAi primary
External "K12D12.2" Links  Wormbase NCBI Phenobank 1 2
Cenix:175-e12 Phenotypes Help with Phenotypes
Phenotype  WT
Cenix:175-e12 Experiment Details Ace View
Laboratory  TH
RNAi Reagent & Type  Cenix:175-e12 (PCR_reagent)
Remark  Wildtype results in all three tests.
Reference  Sonnichsen B et al. (2005) Nature "Full-genome RNAi profiling of early embryogenesis in Caenorhabditis ...."
Delivery Method  Injection
Date  2005-3-24
Gene Plot of K12D12.3 Browse using GBrowse
Gene Graph
Gene Plot of K12D12.2 Browse using GBrowse
Gene Graph